Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq249 224 2e-56 seq843 203 8e-50 seq20 156 1e-35 >seq249 Length=9465 Score = 224 bits (248), Expect = 2e-56 Identities = 300/411 (73%), Gaps = 16/411 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| ||| || |||| | |||| ||||| | Sbjct 5226 CGACTACGCCTTTCGGCCTCGCCTTAGGGGCCGGCTAACCCTGCTCAGATTAACTTTAAG 5285 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCAC-CCGTCACACGCTACTCATGCCT 119 | |||||||||||| |||||| | | || ||| || | || |||||||| | Sbjct 5286 CAGGAACCCTTGGACTTTCGGCGAGGGAGTCTCTCACTCCCTTTATCGTTACTCATGTCA 5345 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAG---CTTCACCA-CTGAC 175 ||||||||||| | | ||||| | ||| | || | | |||||| || || Sbjct 5346 GCATTCTCACTTCCGATACCTCCAGGAT---GTCTCACGACTGTCCCTTCACAGGCTTAC 5402 Query 176 ACGACGCTCCCCTACCCAACCACACAGGTTG--CCACAGCTTCGGCGGATAACTTAAGCC 233 ||||||| ||||| | |||| | || |||||||||||| | || ||| |||| Sbjct 5403 GGAACGCTCCGCTACC-ACGCACAAATGTGCATCCACAGCTTCGGTGTATGGCTTTAGCC 5461 Query 234 CCGCTACATTATCGGCGCGGAATCACTT-----GACCAGTGAGCTATTACGCACTCTTTC 288 ||| |||||| ||||||| | | ||| |||||||||||| |||||| ||||| Sbjct 5462 CCGGTACATTTTCGGCGCAAAGACCCTTATTTAGACCAGTGAGCTGTTACGCTTTCTTTA 5521 Query 289 AAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCA 348 || |||||||||||| |||||||| |||||||||| | | | | |||||||||||||| Sbjct 5522 AATGATGGCTGCTTCTAAGCCAACATCCTGGTTGTTTTGGGATCCTCACATCCTTTCCCA 5581 Query 349 CTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTC 399 || || || |||||||| |||||| || || || ||| |||| ||||||| Sbjct 5582 CTTAGCCATAACTTAGGGACCTTAGATGGTGGTCAGGGTTGTTGCCCTCTC 5632 >seq843 Length=2902 Score = 203 bits (224), Expect = 8e-50 Identities = 299/418 (72%), Gaps = 24/418 (6%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| || || |||| | | ||| ||||| || Sbjct 368 CGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGGCTAACCCTGCGAAGATTAACTTTACG 427 Query 61 CTGGAACCCTTGGATAATCGGCGG-ACGGGATTCCCACCCGTCACACGCTACTCATGCCT 119 | |||||||||||| |||||| || | || | || || |||||||||| Sbjct 428 CAGGAACCCTTGGACTTTCGGCGACACTGTCTTTCACAGTGTTTGTCGTTACTCATGCCA 487 Query 120 GCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA--CTGACA 176 |||||| |||| | || | ||||| | | |||| | | | | || || ||| Sbjct 488 GCATTCGCACTTCTGAT-ACCTCCAGG-CGCTCTCACGAGTCGCCCTTCGCAGGCTTACA 545 Query 177 CGACGCTCCCCTACCCAACCACACAGGTTGCCACA----------GCTTCGGCGGATAAC 226 ||||||| ||||| | |||| |||| | | |||||||| | | Sbjct 546 GAACGCTCCGCTACCA---CGCACATCTTGCGATATGCATCCTAAGCTTCGGCTCGTGGC 602 Query 227 TTAAGCCCCGCTACATTATCGGCGCGGAATCACTT-----GACCAGTGAGCTATTACGCA 281 || ||||||| ||||| ||||||| | | | ||| |||||||||||| |||||| Sbjct 603 TTGAGCCCCGTTACATCTTCGGCGCAGGAACCCTTATTTAGACCAGTGAGCTGTTACGCT 662 Query 282 CTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCC 341 ||||| ||||||||||||||| ||||||||||||||||||| | | | |||||||| Sbjct 663 TTCTTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTGGTTGTTTTGGGATTCCCACATCC 722 Query 342 TTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTC 399 ||||||||| || ||| | |||||||||||||||| | || ||| |||||||||||| Sbjct 723 TTTCCCACTTAGCCACGAATTAGGGGCCTTAGCTGTAGGTCCGGGTTGTTTCCCTCTC 780 >seq20 Length=12842 Score = 156 bits (172), Expect = 1e-35 Identities = 288/420 (69%), Gaps = 22/420 (5%) Strand=Plus/Minus Query 1 CGACTACGCCTGT-CGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGAC 59 ||||||| ||| | ||| |||||||||||| |||||| |||| ||||| ||||| || Sbjct 10858 CGACTACTCCTTTACGGACTCGCCTTAGGAACCGACTAACCCTACGCAGATTAACTTAAC 10799 Query 60 CCTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCG-TCACACGCTACTCATGCC 118 ||||||||| ||| | || | | | || ||| | | |||||||| ||| | Sbjct 10798 GTAGGAACCCTTAGATTTTTGGTGAGAGTGTTTTTCACACTCTTTTACGCTACTTATGTC 10739 Query 119 TGCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACC-ACTGACAC 177 ||||||||||| | | ||||| || |||| | |||||| ||| || Sbjct 10738 AGCATTCTCACTTCCGATATCTCCAGCAGTTT-TCACAAACCGCCTTCACAGACTTACGG 10680 Query 178 GACGCTCCCCTACCCAACCAC-------------ACAGGTTGCCACAGCTTCGGCGGATA 224 ||||||| ||||| || | | | ||||| |||||| | | Sbjct 10679 AACGCTCCGCTACCGCGCCTATTAATCGAAATTAATAAGCACCCACATCTTCGGTATACA 10620 Query 225 ACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTT-----GACCAGTGAGCTATTACG 279 ||| ||||||| |||||| |||| || ||| |||| ||| |||||||| ||||| Sbjct 10619 GCTTTAGCCCCGGTACATTTTCGGTGCAGAAAAACTTATTTAGACAAGTGAGCTGTTACG 10560 Query 280 CACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACAT 339 | ||||| ||||||||||||||||||||||||||||| | ||| | ||||| | Sbjct 10559 CTTTCTTTAAAGGATGGCTGCTTCCAAGCCAACCTCCTAGCTGTAATGGTTTTTCCACTT 10500 Query 340 CCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTC 399 |||| |||||| || | || ||| |||||| | ||||||||||||||||||| || Sbjct 10499 CCTTCCCCACTTAGCTGTAATTTTGGGACCTTAGATAGTGATCTGGGCTGTTTCCCTTTC 10440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177582347776