Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq249 145 6e-33 seq917 131 1e-28 seq1212 118 9e-25 seq966 104 2e-20 >seq249 Length=9465 Score = 145 bits (160), Expect = 6e-33 Identities = 131/162 (81%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||| | ||||||| ||| ||| |||| | ||||||||| | |||||| Sbjct 7629 TCGAGTTGCAGAGTGCAATCCGAACTGAGATGG-CTTTTGGAGATTAGCTCACACTCGCG 7687 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || |||| |||| ||||||||| ||||||| ||||| ||| ||||||||| Sbjct 7688 TGCTCGCTGCCCACTGTCACCACCATTGTAGCACGTGTGTAGCCCAGCCCGTAAGGGCCA 7747 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTC-CGGTTTGTCAC 161 |||||||||||||||||||||||||||||| ||| || |||| Sbjct 7748 TGAGGACTTGACGTCATCCCCACCTTCCTCTCGGCTTATCAC 7789 >seq917 Length=2224 Score = 131 bits (144), Expect = 1e-28 Identities = 119/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| ||||||||||| || ||||| || |||| ||| ||||||| Sbjct 1017 TCGAGTTGCAGACTTCAATCCGGACTGAGACTGACTTTTTGAGATTTGCTTGACCTCGCG 1076 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | || ||| | || ||||| |||||||| ||||||| ||||| |||||||| || Sbjct 1077 GTTTAGCGACTCTTTGTATCAGCCATTGTAGCACGTGTGTAGCCCAGGTCATAAGGGGCA 1136 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTC 150 ||| || |||||||| |||||||||||||| Sbjct 1137 TGATGATTTGACGTCGTCCCCACCTTCCTC 1166 >seq1212 Length=36954 Score = 118 bits (130), Expect = 9e-25 Identities = 125/162 (77%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||| ||||||||| ||| ||| |||| |||||||||| || ||| Sbjct 2238 TCGAGTTGCAGAGTACAATCCGAACTGAGATGT-CTTTTAGGGATTAGCTTAGGCTTGCG 2180 Query 61 GGT-TGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 | || |||| |||| ||||||||| ||||||| ||||| |||||| |||| Sbjct 2179 CACCTTGCAGCCCATTGTAGACACCATTGTAGCACGTGTGTAGCCCACTCCATAAAGGCC 2120 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||| |||||||| |||||||||||||||||| | || |||| Sbjct 2119 ATGATGACTTGACATCATCCCCACCTTCCTCCAGCTTATCAC 2078 >seq966 Length=90452 Score = 104 bits (114), Expect = 2e-20 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 70 CCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTT 129 ||||||||| |||||||| ||||||| ||||| || |||||||||||||||||| Sbjct 89706 CCCTCTGTAGTCGCCATTGTAGCACGTGTGTAGCCCACCCTGTAAGGGCCATGAGGACTT 89647 Query 130 GACGTCATCCCCACCTTCCTCCGGTTT 156 |||||||||||||||||||||||| || Sbjct 89646 GACGTCATCCCCACCTTCCTCCGGCTT 89620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415993959030