Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq917 273 4e-71 seq249 260 2e-67 seq966 226 5e-57 seq1212 185 1e-44 seq67 150 3e-34 >seq917 Length=2224 Score = 273 bits (302), Expect = 4e-71 Identities = 228/278 (82%), Gaps = 1/278 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| ||| || ||||||| | | |||| | ||||||||||||||||||| Sbjct 1553 CCCACGCTTTCGTGCCACAACGTCAGTAATAGGCCAGTTAGCCGCCTTCGCCACTGGTGT 1612 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| | |||||||||||||| |||||||||||| | |||||| | ||||||| || Sbjct 1613 TCCTTCATATATCTACGCATTCCACCGCTACACATGAAATTCCACTAACCTCTCCTATAC 1672 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || || |||||| || || || || ||||||||||| || ||| | || |||| Sbjct 1673 TCTAGTAATGTAGTTTCCAAGGC-GGTTAGGGGTTGAGCCCCTAAATTTAATCTCAGACT 1731 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 ||| ||| |||| | | |||||| ||||||||||||||||||||||||||||||| | Sbjct 1732 TGCAAAACCGTCTACGCACGCTTTACGCCCAATAAATCCGGATAACGCTTGCCACCTATG 1791 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTT 278 ||||||||||||||||||||| |||||||||||||||| Sbjct 1792 TATTACCGCGGCTGCTGGCACATAGTTAGCCGTGGCTT 1829 >seq249 Length=9465 Score = 260 bits (288), Expect = 2e-67 Identities = 227/282 (80%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| ||||||||||||| | |||||| | ||||||||||||||||||| Sbjct 8178 CCCACGCTTTCGCACCTCAGCGTCAGTAATGGTCCAGTGAGCCGCCTTCGCCACTGGTGT 8237 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 ||||||| ||||||||| |||||||| |||||| ||||||||| | ||||| | || Sbjct 8238 TCCTCCGAATATCTACGAATTTCACCTCTACACTCGGAATTCCACTCACCTCTACCATAC 8297 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 |||||| |||| ||||| |||| ||||||||||| | |||||| |||||| Sbjct 8298 TCAAGACTTCCAGTATCAAAGGCAGTTCCGGGGTTGAGCCCCGGGATTTCACCCCTGACT 8357 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | |||||||| || |||||| |||| |||||||| | |||||| ||| ||| || Sbjct 8358 TAAAAGTCCGCCTACGTGCGCTTTACGCCCAGTAAATCCGAACAACGCTAGCCCCCTTCG 8417 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 |||||||||||||||||||||| ||||||||| ||||| ||| Sbjct 8418 TATTACCGCGGCTGCTGGCACGAAGTTAGCCGGGGCTTCTTC 8459 >seq966 Length=90452 Score = 226 bits (250), Expect = 5e-57 Identities = 224/290 (77%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| |||||||||||||| | |||| |||||||||||||||||| Sbjct 89228 CCCACGCTTTCGAGCCTCAGCGTCAGTAATGAGCCAGTGTGTCGCCTTCGCCACTGGTGT 89169 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || |||| ||||||||| |||||||| |||||| |||| |||| |||||| || Sbjct 89168 TCTTCCGAATATCTACGAATTTCACCTCTACACTCGGAGTTCCACACACCTCTCTCATAC 89109 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 |||||| | |||| ||||| ||| |||||||||| | |||||| |||||| Sbjct 89108 TCAAGACACCCAGTATCAAAGGCAATTCCGAGGTTGAGCCCCGGGATTTCACCCCTGACT 89049 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | |||||||| | |||||||| |||| ||| |||| |||||| ||| ||| || Sbjct 89048 TAAATGTCCGCCTACGCTCCCTTTACGCCCAGTAATTCCGAGCAACGCTAGCCCCCTTCG 88989 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||| ||||||||| ||||| ||| | |||| Sbjct 88988 TATTACCGCGGCTGCTGGCACGAAGTTAGCCGGGGCTTCTTCTCCGGGTA 88939 >seq1212 Length=36954 Score = 185 bits (204), Expect = 1e-44 Identities = 210/282 (74%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||| ||||||| |||||||||| | |||| | |||||||||||||||||| Sbjct 1688 CCCACGCCTTCGCGCTTCAGCGTCAGATTTGAACCAGATAGACGCCTTCGCCACTGGTGT 1629 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| |||| |||| |||| ||| ||||| |||||||| | ||||| | Sbjct 1628 TCCTCCTAATATTTACGAATTTTACCTCTACATCAGGAATTCCTCTATCCTCTTTCAATC 1569 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || ||| || ||||| ||| ||| |||| |||| | |||||| | | ||| Sbjct 1568 TCTAGATTAATAGTTTTAAAAGCAATTCCAAGGTTAAGCCTCGGGATTTCACTTTTAACT 1509 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | || |||||| |||||||||| |||||||| |||| |||||||| ||| || || Sbjct 1508 TATTAACCAGCCTACGCGCCCTTTACGCCCAATAATTCCGAATAACGCTAGCCCTCTCCG 1449 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 |||||||||||||||||||||| |||||||| | ||| ||| Sbjct 1448 TATTACCGCGGCTGCTGGCACGGAGTTAGCCAGGACTTCTTC 1407 >seq67 Length=373 Score = 150 bits (166), Expect = 3e-34 Identities = 144/183 (79%), Gaps = 1/183 (1%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| ||| || ||||||| | | |||| | |||| |||||||||||||| Sbjct 194 CCCACGCTTTCGTGCCACAACGTCAGTAATAGGCCAGTTAGCCGCTTTCGCCACTGGTGT 135 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| | |||||||||||||| |||||||||||| | |||||| | ||||||| || Sbjct 134 TCCTTCATATATCTACGCATTCCACCGCTACACATGAAATTCCACTAACCTCTCCTATAC 75 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || || |||||| || || || || ||||||||||| || ||| || || |||| Sbjct 74 TCTAGTAATGTAGTTTCCAAGGC-GGTTAGGGGTTGAGCCCCTAAATTTAACCTCAGACT 16 Query 181 TGC 183 ||| Sbjct 15 TGC 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828787964529