Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq693 129 4e-28 seq249 129 4e-28 seq20 122 6e-26 seq1051 96.9 2e-18 >seq693 Length=350174 Score = 129 bits (142), Expect = 4e-28 Identities = 112/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||| |||| | ||||||||||||||||||| Sbjct 349862 TACCTTTTATCCGTTGAGCGATGGCCCATCCACGCGGGACCACCGGATCACTATGACCGA 349921 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | |||||| ||||||| ||| ||| ||| ||||||| ||| Sbjct 349922 CTTTCGTCTCTGCTCGACTTGTTGGTCTCGCAGTCAGGCAGGCTTATGCCATTATACTCG 349981 Query 121 CACTACGATTTCCGACCGT 139 ||||||||||||||| Sbjct 349982 ACGAACGATTTCCGACCGT 350000 >seq249 Length=9465 Score = 129 bits (142), Expect = 4e-28 Identities = 112/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 4293 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGACCGA 4352 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | |||| ||| ||| ||| ||| ||| |||||||||||| Sbjct 4353 CTTTCGTCTCTGCTCGACTTGTCAGTCTTGCAGTCAGGCAGGCTTATGCCATTGCACTCG 4412 Query 121 CACTACGATTTCCGACCGT 139 ||||||||||||||| Sbjct 4413 ACGAACGATTTCCGACCGT 4431 >seq20 Length=12842 Score = 122 bits (134), Expect = 6e-26 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||| ||||||||| || | |||||||||||||||||| Sbjct 11794 TACCTTTTATCCGTTGAGCGATGACCCTTCCATACAGAATCACCGGATCACTATGACCGA 11735 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| |||||| |||| ||| || ||| ||| ||| |||||||| ||||| Sbjct 11734 CTTTCGTCTCTGCTTGGCTTGTCAGCCTCACAGTCAGGCAAGCTTATGCCATTGTACTAT 11675 Query 121 CACTACGATTTCCGACC 137 || ||||||||||| Sbjct 11674 CAAGCTGATTTCCGACC 11658 >seq1051 Length=1463 Score = 96.9 bits (106), Expect = 2e-18 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| || | ||||| || || ||||||||||| | || Sbjct 436 TAACTTTTATCCGTTGAGCGACGGTCTTTCCACACAGCACCGCCGGATCACTAAGCCCAA 377 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| |||||| | |||| ||||||| |||||||| ||||| || |||| || | Sbjct 376 CTTTCGTTCCTGCTCGACTTGTATGTCTCGCAGTCAAGCACCCTTTTACCTTTGCGCTCT 317 Query 121 CACTACGATTTCC 133 || ||||||| Sbjct 316 ACATATGATTTCC 304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351995053300