Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq249 141 9e-32 seq20 123 2e-26 seq693 120 3e-25 seq1051 75.2 1e-11 >seq249 Length=9465 Score = 141 bits (156), Expect = 9e-32 Identities = 125/156 (80%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| | | |||||||||||||||||||| |||||| ||| Sbjct 4305 GTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 4364 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| |||| ||| ||||||| || ||||||||||||||||| | ||||| || Sbjct 4365 CTCGACTTGTCAGTCTTGCAGTCAGGCAGGCTTATGCCATTGCACTCGACGAACGATTTC 4424 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||||| | ||| ||| ||| || ||||||||| Sbjct 4425 CGACCGTTCTGAGCCTACCATCGCGCGCCTCCGTTA 4460 >seq20 Length=12842 Score = 123 bits (136), Expect = 2e-26 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||| ||||||||| ||||| |||||||||||||||||| |||||| ||| Sbjct 11782 GTTGAGCGATGACCCTTCCATACAGAATCACCGGATCACTATGACCGACTTTCGTCTCTG 11723 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 || | |||| ||| |||||| || |||||||||||||| |||| | ||| || Sbjct 11722 CTTGGCTTGTCAGCCTCACAGTCAGGCAAGCTTATGCCATTGTACTATCAAGCTGATTTC 11663 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||| ||||| ||||||| | ||||||||| Sbjct 11662 CGACCAGCTCTAGCTTACCTTCGCACGCCTCCGTTA 11627 >seq693 Length=350174 Score = 120 bits (132), Expect = 3e-25 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||| |||| | | |||||||||||||||||||| |||||| ||| Sbjct 349874 GTTGAGCGATGGCCCATCCACGCGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 349933 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| || ||||||||||| || |||||||||||| ||| | ||||| || Sbjct 349934 CTCGACTTGTTGGTCTCGCAGTCAGGCAGGCTTATGCCATTATACTCGACGAACGATTTC 349993 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||||| | ||| ||| ||| | ||||||||| Sbjct 349994 CGACCGTTCTGAGCCTACCGTCGCACGCCTCCGTTA 350029 >seq1051 Length=1463 Score = 75.2 bits (82), Expect = 1e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| || | ||||| ||| ||| ||||||||||| | || |||||| |||| Sbjct 424 GTTGAGCGACGGTCTTTCCACACAGCACCGCCGGATCACTAAGCCCAACTTTCGTTCCTG 365 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||||| || |||||||||||||| ||| | || |||| || Sbjct 364 CTCGACTTGTATGTCTCGCAGTCAAGCACCCTTTTACCTTTGCGCT 319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473593122588