Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq1051 300 2e-79 seq249 295 1e-77 seq693 279 8e-73 seq20 279 8e-73 seq854 118 2e-24 >seq1051 Length=1463 Score = 300 bits (332), Expect = 2e-79 Identities = 226/266 (85%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 10 CTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCAC 69 ||||| |||||||||| |||||| ||||| | | || || ||||| ||||||| ||| Sbjct 763 CTTCGCGCTTAGATGCTTTCAGCGCTTATTCATGCCCTACATAGCTACCCAGCTGTGCCA 704 Query 70 TTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACA 129 |||| |||||||||||||||||||| |||||| ||||||||||||||||| | ||| Sbjct 703 CTGGCGTGACAACTGGTGCACCAGAGGTAGGTCCATTCCGGTCCTCTCGTACTAGGAACA 644 Query 130 GCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCT 189 ||| |||||||||| | |||||||||| |||||||||| ||||||||| ||||||||| Sbjct 643 GCTTTCCTCAAATTTCTTGCGCCCACGACAGATAGGGACCAAACTGTCTCACGACGTTCT 584 Query 190 GAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAG 249 ||||||||||||||| || ||||||||||||||||||||||||||||| | | ||| || Sbjct 583 GAACCCAGCTCGCGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAAGCGACTACAC 524 Query 250 CCCCAGGATGAGACGAGCCGACATCG 275 | |||||||| || |||||||||||| Sbjct 523 CTCCAGGATGCGATGAGCCGACATCG 498 >seq249 Length=9465 Score = 295 bits (326), Expect = 1e-77 Identities = 229/273 (84%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 3 AGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC 62 ||| ||| ||| ||||||||||||||||| ||||||| ||| | ||||| ||| || Sbjct 3959 AGGTGGGTTTCCCGCTTAGATGCCTTCAGCGGTTATCCCGTCCGTATATAGCTACCCTGC 4018 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 ||||| |||||| ||||| ||| |||||||| | ||||||||||||||||||||||| Sbjct 4019 TATGCCGTTGGCACGACAACAGGTCCACCAGAGATACGTCCATCCCGGTCCTCTCGTACT 4078 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | |||||| |||| |||| ||||||| |||||| | |||||||||||||||||||| || Sbjct 4079 AGGGACAGATCCTATCAATATTCCTACACCCACGGCAGATAGGGACCGAACTGTCTCACG 4138 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||| ||| ||| || |||||| ||||||||||| ||||||||||||| Sbjct 4139 ACGTTCTGAACCCAACTCACGTACCGCTTTAAATGGCGAACAGCCATACCCTTGGGACCT 4198 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || ||||||||||||| || ||| |||||||| Sbjct 4199 GCTCCAGCCCCAGGATGCGATGAGTCGACATCG 4231 >seq693 Length=350174 Score = 279 bits (308), Expect = 8e-73 Identities = 226/274 (82%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||| ||| |||||||||| |||||| ||||||| ||| || ||||| | | Sbjct 349527 GAGGTGGGTTTCCCGCTTAGATGCTTTCAGCGGTTATCCCGTCCGTACATAGCTATGCTG 349586 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | ||| |||| ||||| | | |||||||||| || ||||||||||||||||||| Sbjct 349587 CACTGCCGCTGGCGCGACAACAGCTCCACCAGAGGTACGTTCATCCCGGTCCTCTCGTAC 349646 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || ||||| ||||||||| |||| || |||||| | |||||||||||||||||||| | Sbjct 349647 TAGGGACAAATCCTCTCAATATTCCAACACCCACGGCAGATAGGGACCGAACTGTCTCAC 349706 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 ||||||||||||||||||| ||| || ||||||| ||||||||||| ||||||||||||| Sbjct 349707 GACGTTCTGAACCCAGCTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGGACC 349766 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || ||||||||||||| || |||||||||||| Sbjct 349767 TTCTCCAGCCCCAGGATGTGATGAGCCGACATCG 349800 >seq20 Length=12842 Score = 279 bits (308), Expect = 8e-73 Identities = 226/274 (82%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 || ||||| ||| ||||| |||| |||||| ||||||| || | || ||||| ||||| Sbjct 12129 GAAGAGGGTTTCTTGCTTATATGCTTTCAGCAATTATCCCATCTATACATAGCTACCCAG 12070 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | |||| |||||| ||| ||||| |||||||||| | |||||| |||||||||||||| Sbjct 12069 CGATGCTATTGGCATAACAGCTGGTACACCAGAGGTATATCCATCTCGGTCCTCTCGTAC 12010 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || | ||| || ||||||||||||| | |||||| | ||||| ||||||||||||| | Sbjct 12009 TAGAGTCAGATCTTCTCAAATTTCCTTCACCCACGGCAGATAGAAACCGAACTGTCTCAC 11950 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||| |||||| ||| ||| | ||||||| ||||||||||| ||||||||||||| Sbjct 11949 GACGTTCTAAACCCAACTCACGTAACACTTTAATCGGCGAACAGCCGAACCCTTGGGACC 11890 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || ||||||||||||| || ||| |||||||| Sbjct 11889 TTCTCCAGCCCCAGGATGTGATGAGTCGACATCG 11856 >seq854 Length=160767 Score = 118 bits (130), Expect = 2e-24 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||| ||| ||||||||||||||||| ||||||| ||| || ||||| | | Sbjct 160612 GAGGTGGGTTTCCCGCTTAGATGCCTTCAGCGGTTATCCCGTCCGTACATAGCTATGCTG 160671 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | ||| |||| ||||| | | |||||||||| || || |||||||||||||||| Sbjct 160672 CACTGCCGCTGGCGCGACAACAGCTCCACCAGAGGTACGTTCACCCCGGTCCTCTCGTAC 160731 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACG 156 || || || ||||||||| ||||||| |||||| Sbjct 160732 TAGGGGCAAATCCTCTCAATATTCCTACACCCACG 160766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780788661564