Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1212 338 2e-90 seq249 277 4e-72 seq966 264 3e-68 seq812 217 4e-54 seq917 201 3e-49 seq1301 75.2 3e-11 >seq1212 Length=36954 Score = 338 bits (374), Expect = 2e-90 Identities = 324/412 (79%), Gaps = 16/412 (4%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||| ||||||||||||| || |||||||||||| ||||||||| ||||||| Sbjct 1371 CTTTACAACCCAAAGGCCTTCTTCACTCATGCGGCATGGCTGGATCAGGCTTTCGCCCAT 1312 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1311 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTATCTCAGTTCCAGTG 1252 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| ||||||||||||| |||||| |||| | |||| ||| ||| ||||| || || Sbjct 1251 TGGCTGATCATCCTCTCAGATCAGCTATAGATCATTGCCTTGGTAGGCTATTACTCCACC 1192 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 |||||||||||| || | || ||||| |||| | | || | ||| | | | Sbjct 1191 AACTAGCTAATCTAATATAGGCTCATCTAATAGCAATA------AATTTTTCCCCCGTAG 1138 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303 | ||| ||| ||||||||| ||||||||| |||| || | | ||| Sbjct 1137 G----GCG----TATACGGTATTAGTTGCCGTTTCCAACAATTATTCCGTACTACTAGGT 1086 Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCACT-CGTCAGCGAAGCAGCAAGCTGCTTCC 362 || |||| | |||||||||||||||| |||||| || | | |||||||| | | Sbjct 1085 AGATTCCTATACATTACTCACCCGTCTGCCACTAAGTTATACCA-TAGCAAGCTACAACA 1027 Query 363 TGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | |||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1026 TAACTCCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCATTCTGAG 975 >seq249 Length=9465 Score = 277 bits (306), Expect = 4e-72 Identities = 177/193 (92%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||| | ||||||| ||| ||||||||||||||| ||||||||||||||||| Sbjct 8495 CTTTACAACCCTAGGGCCTTCATCACTCACGCGGCATGGCTGGATCAGGCTTGCGCCCAT 8554 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 8555 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 8614 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| |||||||||||||||||||| |||||||||||| |||| ||| ||||| | || Sbjct 8615 TGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTGAGCCTTTACCTCACC 8674 Query 184 AACTAGCTAATCC 196 ||||||||||||| Sbjct 8675 AACTAGCTAATCC 8687 >seq966 Length=90452 Score = 264 bits (292), Expect = 3e-68 Identities = 304/410 (74%), Gaps = 32/410 (8%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||||| || ||| ||||| |||| |||||||||||||||| |||||||| |||||||| Sbjct 88910 TTTACAATCCTAAGACCTTCATCATTCACGCGGCATGGCTGCGTCAGGCTTTCGCCCATT 88851 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | |||| |||||||||||||||||||||||||||| ||| |||||||||||| ||| ||| Sbjct 88850 GCGCAAGATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAATGT 88791 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||||||||||||| ||||||||||| |||| ||| ||||| | ||| Sbjct 88790 GGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTACCTCACCA 88731 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | ||| || | | || | || | ||| | || Sbjct 88730 ACTAGCTAATCAGACGCGGGCCGCTCTAAAGGCGATA------AATCTTTCCCCCGAAGG 88677 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 | || || |||||||||| |||||| ||||| || || ||||| Sbjct 88676 GC-----AC---ATTCGGTATTAGCACAAGTTTCCCTGAGTTATTCCGAACCTAAAGGCA 88625 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 |||||| |||||||||||||||||||| | ||||| || | Sbjct 88624 CGTTCCCACGTGTTACTCACCCGTCCGCCACT-AACTCCGAAG-----AGTT-------- 88579 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 88578 ----CGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCGCTCTGAG 88533 >seq812 Length=1388629 Score = 217 bits (240), Expect = 4e-54 Identities = 268/368 (73%), Gaps = 30/368 (8%) Strand=Plus/Plus Query 47 ATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACC 106 ||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||| || Sbjct 2 ATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCC 61 Query 107 GTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGG 166 |||||||||| ||| |||||||| |||||||||||||||||||| ||||||||||| || Sbjct 62 GTGTCTCAGTCCCAATGTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGG 121 Query 167 TGGGCCATTACCCCGCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCC 226 || ||| ||||| | ||||| |||||||| | ||| ||||| | ||| Sbjct 122 TGAGCCGTTACCTCACCAACAAGCTAATCAGACGCGGG-----CCGATCTT--TCGGCGA 174 Query 227 GAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTT 286 || ||||| | | | |||| |||||||||| |||||| ||| Sbjct 175 TAA-------ATCTTTCCCCGTAAGGGCTTATTCGGTATTAGCACAAGTTTCCCTGTGTT 227 Query 287 ATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAA 346 | || ||| ||| | |||||| | ||||||||||||| |||||| || Sbjct 228 GTTCCGAACCAAAAGGTACGTTCCCACGCGTTACTCACCCGTCTGCCACT-------GAC 280 Query 347 GCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTC 406 | | || || ||||||||||||||||||||| ||||||||||||||||| Sbjct 281 GTA---------TTGCTACGCCCGTTCGACTTGCATGTGTTAAGCCTGCCGCCAGCGTTC 331 Query 407 AATCTGAG 414 |||||| Sbjct 332 GCTCTGAG 339 >seq917 Length=2224 Score = 201 bits (222), Expect = 3e-49 Identities = 159/191 (83%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||||| |||||| ||||| ||| |||||||||| ||| |||||||||| ||||||| Sbjct 1895 CTTTACAATCCGAAGACCTTCATCAGTCACGCGGCATTGCTCCATCAGGCTTTCGCCCAT 1954 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 |||| || |||||| |||||||||| |||||| ||| ||| |||||||||||| ||| || Sbjct 1955 TGTGAAAAATTCCCTACTGCTGCCTTCCGTAGAAGTTTGGGCCGTGTCTCAGTCCCAATG 2014 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||| | ||||||||||||| | |||| | ||||| ||| ||| ||||||||| || Sbjct 2015 TGGCCGTTCATCCTCTCAGATCGGCTACGCATCGTTACCTTGGTAAGCCATTACCTTACC 2074 Query 184 AACTAGCTAAT 194 |||||| |||| Sbjct 2075 AACTAGTTAAT 2085 >seq1301 Length=25890 Score = 75.2 bits (82), Expect = 3e-11 Identities = 44/46 (96%), Gaps = 0/46 (0%) Strand=Plus/Minus Query 369 CGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 25846 CGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCGCTCTGAG 25801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222381676224