Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq966 403 5e-110 seq249 392 1e-106 seq1212 365 1e-98 seq917 311 3e-82 seq812 233 6e-59 >seq966 Length=90452 Score = 403 bits (446), Expect = 5e-110 Identities = 296/343 (86%), Gaps = 1/343 (0%) Strand=Plus/Plus Query 158 CCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCG 217 |||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||| | Sbjct 88711 CCCGCGTCTGATTAGCTAGTTGGTGAGGTAAAGGCTCACCAAGGCGACGATCAGTAGCTG 88770 Query 218 ACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGC 277 |||||||| ||||| |||||||||| |||||||||||| ||||||||||||||||||| Sbjct 88771 GTCTGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGC 88830 Query 278 AGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT 337 ||||||||||||| |||| |||||||| ||||||||| ||||| | ||||||||| ||| Sbjct 88831 AGCAGTGGGGAATCTTGCGCAATGGGCGAAAGCCTGACGCAGCCATGCCGCGTGAATGAT 88890 Query 338 GAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGG 397 ||||| ||| || | ||||| ||| || | ||| |||||||||||||| | || | Sbjct 88891 GAAGGTCTTAGGATTGTAAAATTCTTTCACCGGGGACGATAATGACGGTACCCGGAGAAG 88950 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 88951 AAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGCTCG 89010 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||||| |||||||||||| ||||||| || ||||||| Sbjct 89011 GAATTACT-GGGCGTAAAGGGAGCGTAGGCGGACATTTAAGTC 89052 >seq249 Length=9465 Score = 392 bits (434), Expect = 1e-106 Identities = 302/357 (85%), Gaps = 1/357 (0%) Strand=Plus/Minus Query 144 CGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCG 203 ||| | ||||| | ||||||| ||||||||||||||| |||||| |||| ||||||||| Sbjct 8709 CGGCAAAGGATCGGCCCGCGTTGGATTAGCTAGTTGGTGAGGTAAAGGCTCACCAAGGCG 8650 Query 204 ACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAA 263 |||||| |||| | |||||||| ||||| |||||| ||| |||||||||||| ||| | Sbjct 8649 ACGATCCATAGCTGGTCTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGA 8590 Query 264 CTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAAC 323 ||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||| | Sbjct 8589 CTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCAT 8530 Query 324 GCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGAC 383 |||||||||| |||||||||| | |||| |||||||||| || | |||||||||||| Sbjct 8529 GCCGCGTGAGTGATGAAGGCCCTAGGGTTGTAAAGCTCTTTCACCGGTGAAGATAATGAC 8470 Query 384 GGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGG 443 |||| | || |||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 8469 GGTAACCGGAGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGG 8410 Query 444 GCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||||||||| | |||| ||||| |||||||||| | |||||| || | ||||||| Sbjct 8409 GCTAGCGTTGTTCGGATTTACT-GGGCGTAAAGCGCACGTAGGCGGACTTTTAAGTC 8354 >seq1212 Length=36954 Score = 365 bits (404), Expect = 1e-98 Identities = 278/326 (85%), Gaps = 2/326 (1%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 ||||||||||||||| |||| || ||||||||| | |||| |||| || ||||||| Sbjct 1180 GATTAGCTAGTTGGTGGAGTAATAGCCTACCAAGGCAATGATCTATAGCTGATCTGAGAG 1239 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286 | ||||| |||||| ||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 1240 GATGATCAGCCACACTGGAACTGAGATACGGTCCAGACTCCTACGGGAGGCAGCAGTGGG 1299 Query 287 GAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTT 346 |||||||| ||||||||| |||||||||| |||| | ||||| |||| || ||||||||| Sbjct 1300 GAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCATGAGTGAAGAAGGCCTT 1359 Query 347 CGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGG 406 |||| |||||||||| | |||||||||||||||||||| || |||| || || Sbjct 1360 TGGGTTGTAAAGCTCTTTTAGTGAGGAAGATAATGACGGTACTCACAGAAGAAGTCCTGG 1419 Query 407 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTG 466 |||||| |||||||||||||||||||||||| || ||||||||||||| |||||||| | Sbjct 1420 CTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGAGGGCTAGCGTTATTCGGAATTA-TT 1478 Query 467 GGGCGTAAAGGGTGCGTAGG-TGGTT 491 |||||||||||| ||||||| ||||| Sbjct 1479 GGGCGTAAAGGGCGCGTAGGCTGGTT 1504 >seq917 Length=2224 Score = 311 bits (344), Expect = 3e-82 Identities = 281/359 (78%), Gaps = 27/359 (8%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 |||| |||||||||||||||| |||||||||||| ||||| |||||||| |||||||| Sbjct 2085 ATTAACTAGTTGGTAAGGTAATGGCTTACCAAGGTAACGATGCGTAGCCGATCTGAGAGG 2026 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||| |||||||||||| |||||||||||| ||||||| |||||| |||||||||| ||| Sbjct 2025 ATGAACGGCCACATTGGGACTGAGACACGGCCCAAACTTCTACGGAAGGCAGCAGTAGGG 1966 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTC 347 ||| || |||||||||| ||||||||||| ||||| ||||||||| |||||||| |||| Sbjct 1965 AATTTTTCACAATGGGCGAAAGCCTGATGGAGCAATGCCGCGTGACTGATGAAGGTCTTC 1906 Query 348 GGGTCGTAAAGCTCTGTCCTCAAGGAAGA--------------------------TAATG 381 || | |||||| ||||| | | |||||| || | Sbjct 1905 GGATTGTAAAGGTCTGTTGTAAGGGAAGAAGTGCTAGAATAGGAAATGATTTTAGTATCG 1846 Query 382 ACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGG 441 || ||| | | || ||||| |||||||||| |||||||||||||||||||||| |||| Sbjct 1845 ACCATACCTTACCAGAAAGCCACGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGG 1786 Query 442 GGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||| ||||||||||||| ||| | |||||||||| |||||||| ||||| ||||| Sbjct 1785 TGGCAAGCGTTATCCGGATTTA-TTGGGCGTAAAGCGTGCGTAGACGGTTTTGCAAGTC 1728 >seq812 Length=1388629 Score = 233 bits (258), Expect = 6e-59 Identities = 150/164 (91%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 152 GATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAG 211 ||| | ||||||||||||||||| |||||| ||||||||||| ||||||||||||||||| Sbjct 165 GATCGGCCCGCGTCTGATTAGCTTGTTGGTGAGGTAACGGCTCACCAAGGCGACGATCAG 106 Query 212 TAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACG 271 |||| | |||||||| ||||| |||||||||| |||||||||||| ||||||||||||| Sbjct 105 TAGCTGGTCTGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACG 46 Query 272 GGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGAT 315 ||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 45 GGAGGCAGCAGTGGGGAATATTGGACAATGGGCGAAAGCCTGAT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497577550976