Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq843 309 1e-81 seq249 298 2e-78 seq20 257 6e-66 >seq843 Length=2902 Score = 309 bits (342), Expect = 1e-81 Identities = 364/482 (76%), Gaps = 14/482 (3%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAG--TCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| ||| |||||| || ||| || | ||||||||||||| ||||||||| ||| Sbjct 1116 CGAGTCTGAATAGGGCGTCAAGTTCGTTGTAT-TAGACCCGAAACCTAGTGATCTAGCCA 1058 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 || |||| |||||||| |||||||| | ||||||| |||||| |||||||||| Sbjct 1057 TGAGCAGGTTGAAGGTGGGGTAACACCCACTGGAGGACCGAACGGGTGCCTGTTGAAAAA 998 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 ||||| ||||| |||||||||||||| || |||||| |||||||||||||||| Sbjct 997 GGCTCCGATGACTTGTGGTTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTGGTTCT 938 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTC--AAGTATCACCATCGGGGGTAGAGCACTGTTA 237 | ||||| |||||||||| ||||| | | || ||| | ||||||||||||||| Sbjct 937 CCGCGAAAGATATTTAGGTATCGCCTCGGATGAAT-ACCGTGGGGGGTAGAGCACTGGAT 879 Query 238 TGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTT 297 |||||||||| | | || ||||||||||| |||||||||||| | || ||| | Sbjct 878 GGGCTAGGGGGACTTACCGTCTTACCAAACCCAACCAAACTCCGAATACCCACGAGTACT 819 Query 298 ACCGCGGGAGT--GAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGA 355 | | ||||||| | ||| ||||||||| |||||| |||||| || || ||||| Sbjct 818 ATC-CGGGAGTCACACGGC--GGGTGCTAACGTCCGTCGTGGAGAGGGAAACAACCCGGA 762 Query 356 CTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGA 415 | ||||||||||||| || | ||||||| | || || || || | | || | Sbjct 761 CCTACAGCTAAGGCCCCTAATTCGTGGCTAAGTGGGA--AAGGATGTGGGAATCCCAAAA 704 Query 416 CAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAG 475 || | |||| |||||||| |||||||||| || |||||||| ||||||||||||||| | Sbjct 703 CAACCAGGAGGTTGGCTTAGAAGCAGCCA-TCCTTTAAAGAAAGCGTAACAGCTCACTGG 645 Query 476 TC 477 || Sbjct 644 TC 643 >seq249 Length=9465 Score = 298 bits (330), Expect = 2e-78 Identities = 360/480 (75%), Gaps = 10/480 (2%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGA-CAGT-CGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| |||||||||| |||| || || | ||||||||||||||||||||||| ||| Sbjct 5968 CGAGTCTGAACAGGGCGTTCAGTTCGATGCAT-TAGACCCGAAACCAAGTGATCTAGCCA 5910 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 || |||| ||||||| |||||||||| ||||||| ||||||||| ||||| || | Sbjct 5909 TGAGCAGGTTGAAGGTACGGTAACACGTACTGGAGGACCGAACCCATATCTGTTGCAATA 5850 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 ||||||| ||||| |||||||||||||| || |||||||||| |||||||||||| Sbjct 5849 GATCGGGATGACTTGTGGCTAGGGGTGAAAGGCCAATCAAACTTGGAGATAGCTGGTTCT 5790 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAG-TATCACCATCGGGGGTAGAGCACTGTTAT 238 | ||||| |||||||||||| || || || | ||| |||||||||||||||| Sbjct 5789 CCGCGAAATCTATTTAGGTAGAGCGTCCAGCGAATACCCCCGGGGGTAGAGCACTGAATG 5730 Query 239 GGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTA 298 ||||| |||| | || ||||| | || |||||||||||| | ||| || Sbjct 5729 GGCTATGGGGACTCACCGTCTTACTGATCCTAATCAAACTCCGAATACCGGGGAGTACTA 5670 Query 299 CCGCG-GGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357 | | | || | ||| ||||||||| |||||| |||||| || || || ||| Sbjct 5669 CTGGGCAGACACACGGC--GGGTGCTAACGTCCGTCGTGGAGAGGGCAACAACCCTGACC 5612 Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417 | || |||||| ||| || | | ||||||| | || || || | | | || ||| Sbjct 5611 ACCATCTAAGGTCCCTAAGTTATGGCTAAGTGGGA--AAGGATGTGAGGATCCCAAAACA 5554 Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 | ||||||||||||| |||||||||| ||||||||||| ||||||||||||||| ||| Sbjct 5553 ACCAGGATGTTGGCTTAGAAGCAGCCA-TCATTTAAAGAAAGCGTAACAGCTCACTGGTC 5495 >seq20 Length=12842 Score = 257 bits (284), Expect = 6e-66 Identities = 331/449 (74%), Gaps = 11/449 (2%) Strand=Plus/Plus Query 33 TAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGG 92 ||||||||||||||||||||||| |||| |||| ||||||| ||||| || ||| Sbjct 10136 TAGACCCGAAACCAAGTGATCTAGTCATGACCAGATTGAAGGTATGGTAAAACATACTGA 10195 Query 93 AGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 ||| |||||| |||||||| || |||| ||||||| |||| |||||||||||||| Sbjct 10196 AGGATCGAACCAGTTAATGTTGCAACATTATTGGATGAGTTGTGATTAGGGGTGAAAGGC 10255 Query 153 TAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCT--CAAGT 210 || |||||||||||||||||||||||| ||||| |||||||||||| || | | || Sbjct 10256 CAATCAAACTTGGAAATAGCTGGTTCTCCGCGAAATCTATTTAGGTAGAGCGTTGTATGT 10315 Query 211 ATCACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGG--TCATTGCGACTTACCAAACC 268 || | ||||||||||||||| | |||||||| |||| | ||||||||| | Sbjct 10316 AT-GTTGTTGGGGGTAGAGCACTGGATAGACTAGGGGGATTCAT--CATCTTACCAAATC 10372 Query 269 ATTGCAAACTCCGAATGCGCATCAGTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGT 328 |||||||||||| | || | | | | | || | | ||||||||| || Sbjct 10373 TAACCAAACTCCGAATACCAATAATTAATTATACAGTAGACACACTACGGGTGCTAA-GT 10431 Query 329 CCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGT 388 ||||| || ||| || | || || | | |||||| ||| |||| |||||||||| Sbjct 10432 CCGTGGTGGAAAGGGAAACAGCCCAGATCACTATCTAAGGTCCCAAAATTACAGCTAAGT 10491 Query 389 TAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCA 448 || ||||| | | | |||||||||| ||||||||||||||||||| || Sbjct 10492 --GGGGAAGGAAGTGGAAAAACCATTACAGCTAGGAGGTTGGCTTGGAAGCAGCCA-TCC 10548 Query 449 TTTAAAGAGTGCGTAACAGCTCACTAGTC 477 |||||||| ||||||||||||||| ||| Sbjct 10549 TTTAAAGAAAGCGTAACAGCTCACTTGTC 10577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689574672896