Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq249 416 1e-113 seq20 286 1e-74 seq1051 226 1e-56 seq693 123 8e-26 >seq249 Length=9465 Score = 416 bits (460), Expect = 1e-113 Identities = 433/566 (77%), Gaps = 23/566 (4%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||||||| ||||| ||||||| || ||| ||| || ||||| || | | |||| | Sbjct 4366 TCGACTTGTCAGTCTTGCAGTCAGGCAGGCTTATGCCATTGCACTCGACGAAC-GATTTC 4424 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | ||| ||||| ||| | | ||||||||||||| ||| ||||| | ||||||||| Sbjct 4425 CGACCGTTCTGAGCCTACCATCGCGCGCCTCCGTTACTCTTTAGGAGG-CGACCGCCCCA 4483 Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCA 179 || ||||||||||||| ||| |||| |||| ||| | ||||| |||||| ||||| Sbjct 4484 GTCAAACTACCCACCATACACGGTCCTGGACCCGGATAACGGGCCGCAGTTAGACATCCA 4543 Query 180 CTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAG 239 || || |||||||||||| | |||||||||| || ||| | || ||| || Sbjct 4544 TATAGGCAAGGGTGGTATTTCAAGGATGACTCCACAATGGCTGGCGCCACTGCTTCAAAG 4603 Query 240 TCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC 299 ||| |||||||||||||||| ||| ||||||||| | |||||||||| ||||| | Sbjct 4604 TCTACCACCTATCCTACACATGCCGACACGAATGCCAGTGTAAAGCTATAGTAAAGGTGC 4663 Query 300 -CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACC 358 |||||||||| |||| |||| ||| | ||||||| || | | | ||||||||| Sbjct 4664 ACGGGGTCTTTCCGTCTAACCGCAGGAACCCCGCATCTTCACGGGGAATTCAATTTCACT 4723 Query 359 GGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACC 418 | | ||| | | |||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 4724 GAGTCTGCGTTGGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACC 4783 Query 419 CGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTT 478 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 4784 CGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT 4843 Query 479 CAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACC 538 ||||| || | || ||| ||||||||||||||||||||| Sbjct 4844 CAATT------------CAATGCTTG-------CACATCTCCTCTTAACCTTCCAGCACC 4884 Query 539 GGGCAGGCGTCAGTCCGTATACCTCG 564 ||||||||||||| || ||||| ||| Sbjct 4885 GGGCAGGCGTCAGACCCTATACGTCG 4910 >seq20 Length=12842 Score = 286 bits (316), Expect = 1e-74 Identities = 399/560 (71%), Gaps = 21/560 (4%) Strand=Plus/Minus Query 5 CTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACC 64 ||||| || ||| |||||| || ||| ||| || ||| | | |||||| || ||| Sbjct 11717 CTTGTCAGCCTCACAGTCAGGCAAGCTTATGCCATTGTACTATCAAGCTGATTTCCGACC 11658 Query 65 AGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAA 124 || || ||||| | |||||||||||| |||| ||||| | ||||||||||| || Sbjct 11657 AGCTCTAGCTTACCTTCGCACGCCTCCGTTACTTTTTAGGAGG-CGACCGCCCCAGTCAA 11599 Query 125 ACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACG 184 ||||||||||| || ||||| |||||| ||| | |||||||||| | | Sbjct 11598 ACTACCCACCATACAATGTCCTAGTTCCAGATAATGAAACGTAGTTAGATATCAAAAGTG 11539 Query 185 GTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCC 244 || ||||||| |||| ||||||| | |||||| | ||| ||||||| Sbjct 11538 TAAAGGGTGGTATCTCAAGGTTGACTCCATTATAGCTAGCGCCATAACTTCAAAGTCTCC 11479 Query 245 CACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGG 303 |||||||||| |||| | | ||| |||| |||||||||| ||||| | |||| Sbjct 11478 CACCTATCCTGCACATCACACTTTTAATAGCAATGTAAAGCTATAGTAAAGGTGCACGGG 11419 Query 304 GTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCC 363 |||| |||||| ||||| | | | |||||| || | | | ||||||| | | Sbjct 11418 GTCTCTTCGTCTAACCGCGGGTACCCCGCATCTGCACGGGGAATTCAATTTCGCTGAAGT 11359 Query 364 TGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACA 423 || | ||||||| | | | |||||||||||||||||| ||||||||||||||||||| Sbjct 11358 GATGTTGGAGACAGTGGAGAAATCGTTACGCCATTCGTGCGGGTCGGAACTTACCCGACA 11299 Query 424 AGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483 ||||||||||||||||||||| || | ||||| |||||||||||||||||||||||| Sbjct 11298 AGGAATTTCGCTACCTTAGGACCGTCAGTGTTACGGCCGCCGTTTACTGGGGCTTCAATT 11239 Query 484 ACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCA 543 || | | | ||| |||| ||||||||||||||||||||| Sbjct 11238 ----------CAGAGCTTG---------CACCCCTCCTATTAACCTTCCAGCACCGGGCA 11198 Query 544 GGCGTCAGTCCGTATACCTC 563 |||||||| || ||||| || Sbjct 11197 GGCGTCAGACCCTATACTTC 11178 >seq1051 Length=1463 Score = 226 bits (250), Expect = 1e-56 Identities = 269/361 (75%), Gaps = 3/361 (1%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||| ||||||||||||||| ||||| | | || | ||| || ||||| || Sbjct 363 TCGACTTGTATGTCTCGCAGTCAAGCACCCTTTTACCTTTGCGCTCTACATATGATTTCC 304 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 | || |||||| ||||||||||||||||||||| |||| ||| ||| |||||||||| Sbjct 303 ATTCATATTGAGGGTACCTTTGGGCGCCTCCGTTACTTTTTAGGA-GGCGACCGCCCCAG 245 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 | |||||||||||||| |||||||| | |||||| ||| | | |||||| | || Sbjct 244 TCAAACTACCCACCAGACACTGTCCTTAGACCAGATTATGATCTCAAGTTAGAATTTCAA 185 Query 181 TACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGT 240 || | || ||||||| ||| ||||||| | |||||||| | |||| || Sbjct 184 TATAGCAAGGGTGGTATCCCAATGGTGACTCCATGCCTACTAGCGTCTGCATATCAACGT 125 Query 241 CTCCCACCTATCCTACACAAAC-CGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC 299 ||||||||||| || |||||| |||| || ||||| |||| | |||| ||| ||| Sbjct 124 CTCCCACCTATGCTGTACAAACTTACACCAAAATTCAATATCAAGTTGTAGTAAAGCTCC 65 Query 300 -CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACC 358 |||||||||| |||| |||| | ||| ||||||| || ||||| |||||||| Sbjct 64 ACGGGGTCTTTCCGTCTAATCGCGGGTAACCTGCATCTTCACAGGTACTAAGATTTCACC 5 Query 359 G 359 | Sbjct 4 G 4 >seq693 Length=350174 Score = 123 bits (136), Expect = 8e-26 Identities = 160/216 (74%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||||||| |||||||||||| || ||| ||| ||| |||| || | | |||| | Sbjct 349935 TCGACTTGTTGGTCTCGCAGTCAGGCAGGCTTATGCCATTATACTCGACGAAC-GATTTC 349993 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | ||| ||||| ||| | | |||||||||||| ||||||||| | ||||||||| Sbjct 349994 CGACCGTTCTGAGCCTACCGTCGCACGCCTCCGTTACTCTTTGGGAGG-CGACCGCCCCA 350052 Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCA 179 || ||||| ||||||| || ||||||| || | ||| || | ||||||||| ||| Sbjct 350053 GTCAAACTGCCCACCATGCGCTGTCCCGGTTCCCGCTCAGGGAACGCGGTTAGATACCCA 350112 Query 180 CTACGGTCAGAGTGGTATTTCA-ACAACGACTCCAC 214 || | || ||||||||||| | ||||||||| Sbjct 350113 TAACCATTAGGGTGGTATTTCACATTGCGACTCCAC 350148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702374481024