Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq249 185 2e-44 seq966 183 6e-44 seq1212 163 6e-38 seq917 158 3e-36 seq812 156 9e-36 >seq249 Length=9465 Score = 185 bits (204), Expect = 2e-44 Identities = 181/232 (78%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141 ||||| ||||||| || ||| |||||||| |||||| | ||||||| |||| || Sbjct 8489 AAAGAGCTTTACAACCC-TAGGGCCTTCATCACTCACGCGGCATGGCTGGATCAGGCTTG 8547 Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201 || |||||| |||||||||| |||||||||||||||||||||| ||| |||||||||||| Sbjct 8548 CGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGT 8607 Query 202 TCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTA 261 ||| ||||| || | |||||||||| | |||| ||||| | || |||| ||| ||| Sbjct 8608 CCCAGTGTGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTGAGCCTTTA 8667 Query 262 CCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACACCGATGAATCTTT 313 || | || |||| ||||| ||||| || ||| | ||||| ||||||| Sbjct 8668 CCTCACCAACTAGCTAATCCAACGCGGGCCGATCCTTTGCCGATAAATCTTT 8719 >seq966 Length=90452 Score = 183 bits (202), Expect = 6e-44 Identities = 160/198 (81%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141 |||||| |||||||||| ||| |||||||| ||||||| | |||||| |||| || | Sbjct 88917 AAAGAATTTTACAATCCTAAGA-CCTTCATCATTCACGCGGCATGGCTGCGTCAGGCTTT 88859 Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201 || |||||| ||| ||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 88858 CGCCCATTGCGCAAGATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGT 88799 Query 202 TCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTA 261 ||||||||| || | |||||||||| | ||| ||||| | || |||| ||| ||| Sbjct 88798 CCCAATGTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTA 88739 Query 262 CCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 88738 CCTCACCAACTAGCTAAT 88721 >seq1212 Length=36954 Score = 163 bits (180), Expect = 6e-38 Identities = 157/200 (79%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 80 TAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACT 139 ||||||| ||||||| || || ||||| || ||| || | ||||||| |||| || Sbjct 1379 TAAAAGAGCTTTACAACCCAAAGG-CCTTCTTCACTCATGCGGCATGGCTGGATCAGGCT 1321 Query 140 CTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCA 199 ||| |||||| |||||||||| |||||||||||||||||||||| |||||||| ||||| Sbjct 1320 TTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTATCTCA 1261 Query 200 GTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGT 259 |||||| ||||| || | |||||||||| | |||| ||| | | || ||| ||| | Sbjct 1260 GTTCCAGTGTGGCTGATCATCCTCTCAGATCAGCTATAGATCATTGCCTTGGTAGGCTAT 1201 Query 260 TACCCCGCCTACTACCTAAT 279 ||| || || |||| ||||| Sbjct 1200 TACTCCACCAACTAGCTAAT 1181 >seq917 Length=2224 Score = 158 bits (174), Expect = 3e-36 Identities = 172/227 (76%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 69 TTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGC 128 || |||||||| || ||| ||||||||||| ||| |||||||| |||||| | | || Sbjct 1876 TTCTTCCCTTACAACAGACCTTTACAATCCGAAGA-CCTTCATCAGTCACGCGGCATTGC 1934 Query 129 TGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGG 188 | |||| || ||| |||||| || ||||| |||||||||| |||||| ||||||| Sbjct 1935 TCCATCAGGCTTTCGCCCATTGTGAAAAATTCCCTACTGCTGCCTTCCGTAGAAGTTTGG 1994 Query 189 ACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCT 248 |||||||||||| ||||||||| | | |||||||||| | ||| |||||| || Sbjct 1995 GCCGTGTCTCAGTCCCAATGTGGCCGTTCATCCTCTCAGATCGGCTACGCATCGTTACCT 2054 Query 249 AGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATC 295 ||| ||| ||||| || |||| ||||| |||||||||||| Sbjct 2055 TGGTAAGCCATTACCTTACCAACTAGTTAATGCGCCGCATCCCCATC 2101 >seq812 Length=1388629 Score = 156 bits (172), Expect = 9e-36 Identities = 143/181 (79%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 |||| || ||| |||||| |||||||||| |||||||||||||||||||||||||| ||| Sbjct 3 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCG 62 Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGT 252 ||||||||| ||||||||| || | |||||||||| | ||| ||||| | || ||| Sbjct 63 TGTCTCAGTCCCAATGTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGT 122 Query 253 GGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACACCGATGAATCTT 312 | ||||||||| | || || | ||||| |||| || ||| | | |||| |||||| Sbjct 123 GAGCCGTTACCTCACCAACAAGCTAATCAGACGCGGGCCGATCTTTCGGCGATAAATCTT 182 Query 313 T 313 | Sbjct 183 T 183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068783978688