Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq1482 273 6e-69 seq743 215 1e-51 seq890 159 9e-35 >seq1482 Length=483770 Score = 273 bits (302), Expect = 6e-69 Identities = 450/647 (70%), Gaps = 8/647 (1%) Strand=Plus/Plus Query 37694 GGCGTCGAAAAAGAAGACCGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCTC 37753 ||||| || || | ||||| || ||| ||| ||||||||||||||||||| ||| Sbjct 421420 GGCGTGGAGAAGCACGACCGCACCGGCACCGGAACGCTGTCGGTGTTCGGCCATCAGACG 421479 Query 37754 CGCTTCAACTTACAAGATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGC--- 37810 ||| ||| || | ||||| ||||| | || ||||| || || ||||| Sbjct 421480 CGCCACAATTTGGCCGCAGGATTCCCGCTGCTCACGACGAAGAA---GC-TATCCCTCAA 421535 Query 37811 -TCCATCATTTATGAACTGCTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCA 37869 || ||| | |||| ||||| |||||| | || ||||| || ||| || || | | Sbjct 421536 ATCGATCGTCCATGAGCTGCTCTGGTTTCTGAAGGGCGACACCAACATCAAGTACCTCAA 421595 Query 37870 GGAGAATGGCGTGACGATTTGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGAT 37929 ||| | ||||| |||| |||||||||||||||||||| |||||||||||||| ||| | Sbjct 421596 GGACCACGGCGTCTCGATCTGGGATGAGTGGGCGGACGAGAACGGCGATCTCGGTCCGGT 421655 Query 37930 TTACGGCGCGCAATGGCGCTCGTGGAAGGGAGCAGACGGGAAAACCATCGACCAGATCGC 37989 || || |||| ||||| || ||| | | ||||| | |||||| |||||||| Sbjct 421656 CTATGGTTCGCAGTGGCGTTCATGGCCCGCGCCGGACGGCCGCAGCATCGATCAGATCGC 421715 Query 37990 ATGGGTTGTCGAAGAGATCAAACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTG 38049 || ||||| |||| || |||||| |||| || |||||| | || || || Sbjct 421716 CAACGTCGTCGAGATGATCCGGCGCAATCCGGATTCGCGGCGGCTGATCGTCTCGGCGTG 421775 Query 38050 GAATGTAGCAGAATTGGACGAGATGAAGCTGCCGCCGTGTCATTACGCCTTTCAGTTCTA 38109 |||| || || | || ||||| |||||| ||||| |||| | ||||||||||| Sbjct 421776 GAATCCCGCCGAGGTCGATAAGATGGCGCTGCCCCCGTGCCATTGCCTGTTTCAGTTCTA 421835 Query 38110 TGTCGCCAACGGCCGGTTGTCATGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTTAGG 38169 ||||||||||||| |||| ||| | | |||||||||| |||| || | || Sbjct 421836 TGTCGCCAACGGCAAACTGTCGTGCCAGCTCTATCAGCGCTCCGCTGATGTCTTCCTCGG 421895 Query 38170 GTTGCCGTTTAACATCGCGAGCTACGCGCTGTTGACGCATATGGTAGCCCAACAATGCGA 38229 ||||||| |||||||| ||| |||||| ||||| ||||| || || || Sbjct 421896 CGTGCCGTTCAACATCGCATCCTATGCGCTGCTGACGATGATGGTCGCACAGGTCACCGG 421955 Query 38230 CTTGGATGTCGGTGAACTCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCT 38289 |||| | | || ||| ||||| ||| || |||| ||| | || |||||||| Sbjct 421956 CTTGAAAGCGGGCGAATTCATTCACACGCTGGGTGACGCGCATCTTTATTCCAATCATCT 422015 Query 38290 GGAACAAGCGAAACTGCAGCTGACGCGCGAGCCGCGCCCGCTGCCGA 38336 |||||| ||| | |||| ||||||||| ||||||| | |||||| Sbjct 422016 GGAACAGGCGCGATTGCAATTGACGCGCGCGCCGCGCGCATTGCCGA 422062 >seq743 Length=263205 Score = 215 bits (238), Expect = 1e-51 Identities = 428/633 (68%), Gaps = 12/633 (2%) Strand=Plus/Minus Query 37709 GACCGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAACTTACAA 37768 ||||| || ||| || ||||||||||||||||| | ||| | ||||||||| | Sbjct 73483 GACCGCACCGGCACGGGTACGCTGTCGGTGTTCGGTCATCAGATGCGCTTCAACCTCGCC 73424 Query 37769 GATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACTG 37828 | || |||||| | ||| || ||||| ||| || | || | | |||||| Sbjct 73423 GCCGGTTTTCCGATGACGACGACCAAAAAGCTGCCGTTCAAGGCGATTGTCCACGAACTG 73364 Query 37829 CTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACGATT 37888 || |||||| | ||||| || ||||| |||||| ||||| | ||||| || || || Sbjct 73363 CTGTGGTTTCTCGCCGGCGACACCAACGTGCGCTATCTGCAGAATAATGGTGTCACCATC 73304 Query 37889 TGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGGCGC 37948 ||||| ||||||||||||| ||||| ||||| || ||| | |||||| ||| |||||| Sbjct 73303 TGGGACGAGTGGGCGGACGCCAACGGGGATCTTGGTCCGGTCTACGGCAAGCAGTGGCGC 73244 Query 37949 TCGTGGAAGGGAGCAGACGGGAAAACCATCGACCAGATCGCATGGGTTGTCGAAGAGATC 38008 || ||| ||| | || || | ||||||||||||||| | || |||| Sbjct 73243 TCATGGCAGGCGCCGGATGGCCGCAGCATCGACCAGATCGCGAACCTCATCCGCATGATC 73184 Query 38009 AAACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAATGTAGCAGAATTGGAC 38068 | ||| |||| || |||||| | || ||||| |||||| || || | || Sbjct 73183 CGCACCACGCCGGATTCGCGGCGGCTGATCGTCAGCGCATGGAATCCGGCCGATGTCGAT 73124 Query 38069 GAGATGAAGCTGCCGCCGTGTCATTACGCCTTTCAGTTCTATGTCGCCAACGGCCGGTTG 38128 | ||| ||||||||| || |||| | || |||||||| ||||| |||||| | Sbjct 73123 CACATGGCGCTGCCGCCATGCCATTGCCTGTTCCAGTTCTACGTCGCGAACGGCAAACTC 73064 Query 38129 TCATGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTTAGGGTTGCCGTTTAACATCGCG 38188 || ||| | | ||||| || | || |||| | || ||||||| ||||||||| Sbjct 73063 TCGTGCCAGCTCTATCAGCGTTCGGCCGACGTGTTTCTCGGCGTGCCGTTCAACATCGCG 73004 Query 38189 AGCTACGCGCTGTTGACGCATATGGTAGCCCAACAATGCGACTTGGATGT------CGGT 38242 ||| |||||| ||||| ||| | || | | | ||| |||| | || Sbjct 73003 TCCTATGCGCTGCTGACGATGATGATCGCAC----AGGTGAC--GGATCTTGCGCCGGGC 72950 Query 38243 GAACTCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAAGCGAAA 38302 || |||| ||| |||||||| ||| |||| || |||||||| || ||| Sbjct 72949 GATTTCATCCACACGCTCGGCGACGCGCATCTGTATTCCAACCATCTGGAGCAGGCGCGC 72890 Query 38303 CTGCAGCTGACGCGCGAGCCGCGCCCGCTGCCG 38335 ||||| |||||||| ||||||| |||||||| Sbjct 72889 CTGCAACTGACGCGGCGGCCGCGCGCGCTGCCG 72857 >seq890 Length=125401 Score = 159 bits (176), Expect = 9e-35 Identities = 441/671 (66%), Gaps = 4/671 (1%) Strand=Plus/Minus Query 37668 ACTTGCTGCAAGACATCTTAGAAAACGGCGTCGAAAAAGAAGACCGAACGGGCGTCGGCA 37727 || |||||| |||||| | || || ||||| || ||||| || ||| ||||| Sbjct 47762 ACCTGCTGCGCGACATCCTCGACAATGGCGTGCGCCGCGACGACCGCACCGGCACCGGCA 47703 Query 37728 CGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAA-CTTACAAGATGGATTTCCGCTCGTG 37786 | ||| || ||||| |||||| | ||||| | || | | | || || || || || Sbjct 47702 CCCTGGGCGTCTTCGGTCGCCAGATTCGCTTTGATCTGGCCA-AGGGCTTCCCCGTCCTG 47644 Query 37787 ACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACTGCTTTGGTTTTTAAAAGGC 37846 || || || || |||| | || || ||||| |||||||| ||||| | ||| Sbjct 47643 ACCACCAAGAAGCTGCACCTGCGTTCGATCATCATCGAACTGCTGTGGTTCCTGCGCGGC 47584 Query 37847 GATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACGATTTGGGATGAGTGGGCGGAC 37906 || || ||| || ||| | ||||||| ||||| || |||||||| ||||| ||| Sbjct 47583 GAGACCAACATCGGCTGGCTCAAGGAGAACGGCGTCCGCATCTGGGATGAATGGGCAGAC 47524 Query 37907 GAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGGCGCTCGTGGAAGGGAGCAGAC 37966 | | ||||| || ||||| | || ||| ||| ||||||||||||| || | ||| Sbjct 47523 GCCGAGGGCGAGCTTGGCCCCGTCTATGGCAAGCAGTGGCGCTCGTGGACGGCGCCGGAC 47464 Query 37967 GGGAAAACCATCGACCAGATCGCATGGGTTGTCGAAGAGATCAAACGAAATCCGCATTCA 38026 || ||||||||| |||| | || | | | |||| |||||| | Sbjct 47463 GGCCGCCTCATCGACCAAATCGAGAAACTGGTTCACGGGCTCAAGACCAATCCGAACGGT 47404 Query 38027 CGCCGGCTGCTGGTGAGCGCTTGGAATGTAGCAGAATTGGACGAGATGAAGCTGCCGCCG 38086 || || | | || ||||| ||||| || || ||||||| ||| ||||||||| Sbjct 47403 CGTCGCCACATCGTCAGCGCCTGGAACCCGGCGGACGTGGACGACATGGCCCTGCCGCCG 47344 Query 38087 TGTCATTACGCCTTTCAGTTCTATGTCGCCAACGGCCGGTTGTCATGCATGTGGCAGCAG 38146 || || | | || ||||||| ||||| |||| | ||| | | | ||| Sbjct 47343 TGCCACTGCCTGTTCCAGTTCTTCGTCGCAGACGGAAAACTCAGCTGCCAGCTGTATCAG 47284 Query 38147 CGCTCCGTTGATACGTTTTTAGGGTTGCCGTTTAACATCGCGAGCTACGCGCTGTTGACG 38206 || || || | || | || ||||||| |||||||| |||||| ||| |||| Sbjct 47283 CGTAGCGCCGACATCTTCCTGGGCGTGCCGTTCAACATCGCCTCCTACGCCCTGCTGACC 47224 Query 38207 CATATGGTAGCCCA-ACAATGCGACTTGGATGTCGGTGAACTCATTTTCACCGGCGGCGA 38265 | ||||| ||||| || | | |||| || || || | ||| |||||| Sbjct 47223 CTGATGGTGGCCCAGGTCGTGGGTC-TGGAGCCGGGCGAGTTCGTCCATACCTTCGGCGA 47165 Query 38266 CGTCCATTTGTACAAAAATCATCTGGAACAAGCGAAACTGCAGCTGACGCGCGAGCCGCG 38325 || ||| |||| || ||||||||||| || |||| ||||||||||||||||| | Sbjct 47164 CGCCCACCTGTATCTGAACCATCTGGAACAGGCCGAACTTCAGCTGACGCGCGAGCCCCT 47105 Query 38326 CCCGCTGCCGA 38336 || ||||||| Sbjct 47104 GCCCCTGCCGA 47094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130637674526350