Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq1414 197 4e-46 seq290 196 2e-45 seq827 129 2e-25 seq1095 127 6e-25 seq769 127 6e-25 >seq1414 Length=16280 Score = 197 bits (218), Expect = 4e-46 Identities = 275/381 (72%), Gaps = 6/381 (2%) Strand=Plus/Minus Query 2514 TAACAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTG 2573 ||| ||||| ||||| || | || ||||||||| ||| ||| || || || || | Sbjct 5542 TAAAAAATATCCAATTATTTCAATTGAAGATGGTTTGGCTGAAGGTGATTGAGAAGGATT 5483 Query 2574 GAAATCTCTTACT-GAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCG 2632 |||| | ||| | ||| | |||||| | ||| | |||||||| || || |||| Sbjct 5482 TAAAT-TATTATTAGAAAAATCAGAAGGTAAATTCCAAGTTGTTGGTGATGATTTATTCG 5424 Query 2633 TAACTAA--CACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCT 2690 | ||||| || ||| || || |||| ||| || ||| |||||| ||| | | Sbjct 5423 TTACTAATCCAAAAATTA--TTAAAGAAGGAATTATTAAAAACGTTGCTAATTCAGTATT 5366 Query 2691 TATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAA 2750 || ||| | || ||||| || || || ||||||||| | || ||||| |||||| | Sbjct 5365 AATTAAACTAAATCAAATTGGAACATTAACTGAAACTATGGAGGCTATTGAAATGTGTCA 5306 Query 2751 AGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAAT 2810 | ||||||| | |||||||||||||| || ||||| || |||||||||||| |||| || Sbjct 5305 AAAAGCTGGGTGAACAGCAGTAGTATCTCATCGTTCTGGGGAAACTGAAGATACAACGAT 5246 Query 2811 CGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTAC 2870 ||||| | ||||| || ||| |||| |||||||| ||||||||| ||||| | || Sbjct 5245 TGCTGACTTAGCAGTAGCTTTTAATACTGGACAAATTAAAACAGGTTCAATGTCAAGAAC 5186 Query 2871 TGACCGTATTGCTAAATACAA 2891 ||| ||| |||| ||||| || Sbjct 5185 TGATCGTGTTGCAAAATATAA 5165 >seq290 Length=212449 Score = 196 bits (216), Expect = 2e-45 Identities = 284/401 (71%), Gaps = 0/401 (0%) Strand=Plus/Minus Query 2521 TACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATCT 2580 || || ||| ||||||||||||||||||||| ||| |||||||||| |||||||| | Sbjct 124970 TATCCTATCGTCACTATCGAAGATGGTATGGCTGAAGACGACTGGGAAGGTTGGAAGTAC 124911 Query 2581 CTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAAC 2640 || || || | | |||| | || ||| | |||||||||||| | ||||| || || Sbjct 124910 CTGACCGATCTTATTGGCGACAAGTGCCAACTCGTTGGTGACGACCTGTTCGTCACCAAT 124851 Query 2641 ACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCTTATCAAAGTT 2700 | ||| || | |||||| || ||| ||||| || || |||| || Sbjct 124850 TCCGCTCGTCTCCGTGACGGTATTCGTATGGGCGTTGCCAACTCGATTCTCGTCAAGGTC 124791 Query 2701 AACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGGA 2760 ||||| ||||| | || ||||||| | ||||| |||||| ||| | | ||||| Sbjct 124790 AACCAGATCGGATCGCTGTCTGAAACGCTCGACGCGGTCGAAACGGCTCATAAGGCTGGC 124731 Query 2761 TACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATT 2820 || || || || | || || ||||| |||||||| || ||||| || || || ||| | Sbjct 124730 TATACTGCCGTCATGTCGCATCGTTCGGGTGAAACCGAGGATTCGACGATTGCCGATCTC 124671 Query 2821 GCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATT 2880 || ||||| || ||| |||||| || ||||| || || || | ||| | ||||||| Sbjct 124670 GCGGTTGCTACCAACTGTGGTCAGATCAAGACTGGCTCGCTGGCCCGTTCGGACCGTACG 124611 Query 2881 GCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGG 2921 || || |||||||| || | |||||||| || ||||||| Sbjct 124610 GCCAAGTACAACCAGCTGATCCGTATCGAGGAGGAACTTGG 124570 >seq827 Length=173386 Score = 129 bits (142), Expect = 2e-25 Identities = 257/381 (67%), Gaps = 0/381 (0%) Strand=Plus/Plus Query 2523 CCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATCTCT 2582 ||| ||| || | ||||| || || |||| |||| |||||| ||||| ||| | || Sbjct 133820 CCCGATCGTCTCGATCGAGGACGGCATGGCCGAAGACGACTTCGACGGCTGGCGCTTGCT 133879 Query 2583 TACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAACAC 2642 || |||||||| || | |||||| |||| || |||||| | ||||| || ||| | Sbjct 133880 GACGGAACGTCTGGGCGACCGGGTTCAACTGGTCGGCGACGACCTGTTCGTGACCAACCC 133939 Query 2643 TGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCTTATCAAAGTTAA 2702 || || | || || | ||| | || ||||| ||||| ||||| || || Sbjct 133940 GGCGCGTCTGGCTGCGGGCATCGGCGAAGGCCTGGCCAACTCGATCCTGATCAAGGTCAA 133999 Query 2703 CCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGGATA 2762 ||| ||||| || || | || || | ||||| |||| |||||| | || || || Sbjct 134000 CCAGATCGGCACCCTGTCCGAGACGCTGGACGCCGTCGATATGGCGCAGCGCGCGGGCTA 134059 Query 2763 CACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATTGC 2822 ||| || || | || || || || || |||||||| || || ||||| || | || Sbjct 134060 CACCGCCGTGATGAGCCATCGCTCGGGCGAGACTGAAGACTCCACCATCGCCGACCTGGC 134119 Query 2823 AGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATTGC 2882 || || || ||| || || || ||||| ||||| || | || | ||||| | || Sbjct 134120 CGTCGCCACCAACTGCGGACAGATCAAGACCGGTTCGCTGGCCCGCTCGGACCGGGTGGC 134179 Query 2883 TAAATACAACCAATTGCTTCG 2903 ||||||||||| |||| || Sbjct 134180 CAAATACAACCAGCTGCTGCG 134200 >seq1095 Length=1089284 Score = 127 bits (140), Expect = 6e-25 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 2680 AACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATC 2739 || || ||||| |||| || ||||| ||||| | |||| || || || | ||| || Sbjct 40185 AATTCGATCCTGGTCAAGGTCAACCAGATCGGCTCGCTGACCGAGACGTTGGCCGCCGTC 40244 Query 2740 GAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAA 2799 || |||||| | || || ||||| || || | || || || || || || || ||| Sbjct 40245 GAGATGGCGTTCAAGGCCGGTTACACCGCGGTGATGTCGCATCGCTCCGGCGAGACGGAA 40304 Query 2800 GATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCA 2859 |||||||| ||||| || |||| ||||| || ||| |||||| || ||||| ||||| Sbjct 40305 GATTCAACGATCGCCGACCTTGCGGTTGCCACCAACTGTGGTCAGATCAAGACCGGTTCG 40364 Query 2860 TTGTCACGTACTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGA 2909 || | || | ||||| | || ||||||||||||||||| || || || Sbjct 40365 CTGGCGCGCGCCGACCGCACCGCCAAATACAACCAATTGCTGCGGATTGA 40414 >seq769 Length=3913 Score = 127 bits (140), Expect = 6e-25 Identities = 262/386 (68%), Gaps = 8/386 (2%) Strand=Plus/Minus Query 2517 CAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAA 2576 |||||| ||||| || |||| ||||||| ||| | ||| |||||| || |||||||| Sbjct 1604 CAAATATCCAATAATTTCTATAGAAGATGCAATGAATGAAGACGACTATGAAGGTTGGAA 1545 Query 2577 ATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAAC 2636 || ||||||| | | || ||||| ||||||| || || || || || || || || Sbjct 1544 ATTACTTACTGCAAAATTGGGAAGTAAAATTCAATTAGTCGGGGATGATTTATTTGTTAC 1485 Query 2637 TAACACTGCTTACCTTGAA--AAAGGTATTGC--AGAACACGCTGCTAACTCAATCCTTA 2692 || || || || ||||| || | |||| | | || || | | || | Sbjct 1484 AAATTGTGA--ACTAATAAGTAAAGGAATAGAGGAGAAAATG--GCAAATGCTGTACTAA 1429 Query 2693 TCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAG 2752 |||| ||||| || || || | || |||||||||| ||||| |||||||| ||| Sbjct 1428 TCAAGCCAAACCAGATAGGAACACTTACGGAAACTTTTGCTGCTATTGAAATGGCAAAAT 1369 Query 2753 AAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCG 2812 | ||| || | || | | || ||||| ||||||||||| |||||| |||| || Sbjct 1368 CAAATGGCTATAGGGCTATTATTTCTCACCGCTCAGGTGAAACAGAAGATACAACGATAT 1309 Query 2813 CTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTG 2872 | | || ||||||| | || ||| ||||| ||||| || || |||| ||| ||| Sbjct 1308 CCCACATATCAGTTGCGTCGAATTGTGGGCAAATAAAGACTGGCTCGCTGTCGCGTTCTG 1249 Query 2873 ACCGTATTGCTAAATACAACCAATTG 2898 | | |||| || || || ||||| Sbjct 1248 ATAGGCTTGCAAAGTATAATGAATTG 1223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156035622418956