Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09]
1,499 sequences; 18,613,147 total letters
Query= NC_023503.1
Length=48800
Score E
Sequences producing significant alignments: (Bits) Value
seq1414 197 4e-46
seq290 196 2e-45
seq827 129 2e-25
seq1095 127 6e-25
seq769 127 6e-25
>seq1414
Length=16280
Score = 197 bits (218), Expect = 4e-46
Identities = 275/381 (72%), Gaps = 6/381 (2%)
Strand=Plus/Minus
Query 2514 TAACAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTG 2573
||| ||||| ||||| || | || ||||||||| ||| ||| || || || || |
Sbjct 5542 TAAAAAATATCCAATTATTTCAATTGAAGATGGTTTGGCTGAAGGTGATTGAGAAGGATT 5483
Query 2574 GAAATCTCTTACT-GAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCG 2632
|||| | ||| | ||| | |||||| | ||| | |||||||| || || ||||
Sbjct 5482 TAAAT-TATTATTAGAAAAATCAGAAGGTAAATTCCAAGTTGTTGGTGATGATTTATTCG 5424
Query 2633 TAACTAA--CACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCT 2690
| ||||| || ||| || || |||| ||| || ||| |||||| ||| | |
Sbjct 5423 TTACTAATCCAAAAATTA--TTAAAGAAGGAATTATTAAAAACGTTGCTAATTCAGTATT 5366
Query 2691 TATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAA 2750
|| ||| | || ||||| || || || ||||||||| | || ||||| |||||| |
Sbjct 5365 AATTAAACTAAATCAAATTGGAACATTAACTGAAACTATGGAGGCTATTGAAATGTGTCA 5306
Query 2751 AGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAAT 2810
| ||||||| | |||||||||||||| || ||||| || |||||||||||| |||| ||
Sbjct 5305 AAAAGCTGGGTGAACAGCAGTAGTATCTCATCGTTCTGGGGAAACTGAAGATACAACGAT 5246
Query 2811 CGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTAC 2870
||||| | ||||| || ||| |||| |||||||| ||||||||| ||||| | ||
Sbjct 5245 TGCTGACTTAGCAGTAGCTTTTAATACTGGACAAATTAAAACAGGTTCAATGTCAAGAAC 5186
Query 2871 TGACCGTATTGCTAAATACAA 2891
||| ||| |||| ||||| ||
Sbjct 5185 TGATCGTGTTGCAAAATATAA 5165
>seq290
Length=212449
Score = 196 bits (216), Expect = 2e-45
Identities = 284/401 (71%), Gaps = 0/401 (0%)
Strand=Plus/Minus
Query 2521 TACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATCT 2580
|| || ||| ||||||||||||||||||||| ||| |||||||||| |||||||| |
Sbjct 124970 TATCCTATCGTCACTATCGAAGATGGTATGGCTGAAGACGACTGGGAAGGTTGGAAGTAC 124911
Query 2581 CTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAAC 2640
|| || || | | |||| | || ||| | |||||||||||| | ||||| || ||
Sbjct 124910 CTGACCGATCTTATTGGCGACAAGTGCCAACTCGTTGGTGACGACCTGTTCGTCACCAAT 124851
Query 2641 ACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCTTATCAAAGTT 2700
| ||| || | |||||| || ||| ||||| || || |||| ||
Sbjct 124850 TCCGCTCGTCTCCGTGACGGTATTCGTATGGGCGTTGCCAACTCGATTCTCGTCAAGGTC 124791
Query 2701 AACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGGA 2760
||||| ||||| | || ||||||| | ||||| |||||| ||| | | |||||
Sbjct 124790 AACCAGATCGGATCGCTGTCTGAAACGCTCGACGCGGTCGAAACGGCTCATAAGGCTGGC 124731
Query 2761 TACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATT 2820
|| || || || | || || ||||| |||||||| || ||||| || || || ||| |
Sbjct 124730 TATACTGCCGTCATGTCGCATCGTTCGGGTGAAACCGAGGATTCGACGATTGCCGATCTC 124671
Query 2821 GCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATT 2880
|| ||||| || ||| |||||| || ||||| || || || | ||| | |||||||
Sbjct 124670 GCGGTTGCTACCAACTGTGGTCAGATCAAGACTGGCTCGCTGGCCCGTTCGGACCGTACG 124611
Query 2881 GCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGG 2921
|| || |||||||| || | |||||||| || |||||||
Sbjct 124610 GCCAAGTACAACCAGCTGATCCGTATCGAGGAGGAACTTGG 124570
>seq827
Length=173386
Score = 129 bits (142), Expect = 2e-25
Identities = 257/381 (67%), Gaps = 0/381 (0%)
Strand=Plus/Plus
Query 2523 CCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATCTCT 2582
||| ||| || | ||||| || || |||| |||| |||||| ||||| ||| | ||
Sbjct 133820 CCCGATCGTCTCGATCGAGGACGGCATGGCCGAAGACGACTTCGACGGCTGGCGCTTGCT 133879
Query 2583 TACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAACAC 2642
|| |||||||| || | |||||| |||| || |||||| | ||||| || ||| |
Sbjct 133880 GACGGAACGTCTGGGCGACCGGGTTCAACTGGTCGGCGACGACCTGTTCGTGACCAACCC 133939
Query 2643 TGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCTTATCAAAGTTAA 2702
|| || | || || | ||| | || ||||| ||||| ||||| || ||
Sbjct 133940 GGCGCGTCTGGCTGCGGGCATCGGCGAAGGCCTGGCCAACTCGATCCTGATCAAGGTCAA 133999
Query 2703 CCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGGATA 2762
||| ||||| || || | || || | ||||| |||| |||||| | || || ||
Sbjct 134000 CCAGATCGGCACCCTGTCCGAGACGCTGGACGCCGTCGATATGGCGCAGCGCGCGGGCTA 134059
Query 2763 CACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATTGC 2822
||| || || | || || || || || |||||||| || || ||||| || | ||
Sbjct 134060 CACCGCCGTGATGAGCCATCGCTCGGGCGAGACTGAAGACTCCACCATCGCCGACCTGGC 134119
Query 2823 AGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATTGC 2882
|| || || ||| || || || ||||| ||||| || | || | ||||| | ||
Sbjct 134120 CGTCGCCACCAACTGCGGACAGATCAAGACCGGTTCGCTGGCCCGCTCGGACCGGGTGGC 134179
Query 2883 TAAATACAACCAATTGCTTCG 2903
||||||||||| |||| ||
Sbjct 134180 CAAATACAACCAGCTGCTGCG 134200
>seq1095
Length=1089284
Score = 127 bits (140), Expect = 6e-25
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 2680 AACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATC 2739
|| || ||||| |||| || ||||| ||||| | |||| || || || | ||| ||
Sbjct 40185 AATTCGATCCTGGTCAAGGTCAACCAGATCGGCTCGCTGACCGAGACGTTGGCCGCCGTC 40244
Query 2740 GAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAA 2799
|| |||||| | || || ||||| || || | || || || || || || || |||
Sbjct 40245 GAGATGGCGTTCAAGGCCGGTTACACCGCGGTGATGTCGCATCGCTCCGGCGAGACGGAA 40304
Query 2800 GATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCA 2859
|||||||| ||||| || |||| ||||| || ||| |||||| || ||||| |||||
Sbjct 40305 GATTCAACGATCGCCGACCTTGCGGTTGCCACCAACTGTGGTCAGATCAAGACCGGTTCG 40364
Query 2860 TTGTCACGTACTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGA 2909
|| | || | ||||| | || ||||||||||||||||| || || ||
Sbjct 40365 CTGGCGCGCGCCGACCGCACCGCCAAATACAACCAATTGCTGCGGATTGA 40414
>seq769
Length=3913
Score = 127 bits (140), Expect = 6e-25
Identities = 262/386 (68%), Gaps = 8/386 (2%)
Strand=Plus/Minus
Query 2517 CAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAA 2576
|||||| ||||| || |||| ||||||| ||| | ||| |||||| || ||||||||
Sbjct 1604 CAAATATCCAATAATTTCTATAGAAGATGCAATGAATGAAGACGACTATGAAGGTTGGAA 1545
Query 2577 ATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAAC 2636
|| ||||||| | | || ||||| ||||||| || || || || || || || ||
Sbjct 1544 ATTACTTACTGCAAAATTGGGAAGTAAAATTCAATTAGTCGGGGATGATTTATTTGTTAC 1485
Query 2637 TAACACTGCTTACCTTGAA--AAAGGTATTGC--AGAACACGCTGCTAACTCAATCCTTA 2692
|| || || || ||||| || | |||| | | || || | | || |
Sbjct 1484 AAATTGTGA--ACTAATAAGTAAAGGAATAGAGGAGAAAATG--GCAAATGCTGTACTAA 1429
Query 2693 TCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAG 2752
|||| ||||| || || || | || |||||||||| ||||| |||||||| |||
Sbjct 1428 TCAAGCCAAACCAGATAGGAACACTTACGGAAACTTTTGCTGCTATTGAAATGGCAAAAT 1369
Query 2753 AAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCG 2812
| ||| || | || | | || ||||| ||||||||||| |||||| |||| ||
Sbjct 1368 CAAATGGCTATAGGGCTATTATTTCTCACCGCTCAGGTGAAACAGAAGATACAACGATAT 1309
Query 2813 CTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTG 2872
| | || ||||||| | || ||| ||||| ||||| || || |||| ||| |||
Sbjct 1308 CCCACATATCAGTTGCGTCGAATTGTGGGCAAATAAAGACTGGCTCGCTGTCGCGTTCTG 1249
Query 2873 ACCGTATTGCTAAATACAACCAATTG 2898
| | |||| || || || |||||
Sbjct 1248 ATAGGCTTGCAAAGTATAATGAATTG 1223
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 156035622418956
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |