Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09]
1,499 sequences; 18,613,147 total letters
Query= NC_031120.1
Length=241147
Score E
Sequences producing significant alignments: (Bits) Value
seq1482 147 3e-30
seq890 113 7e-20
seq743 102 1e-16
>seq1482
Length=483770
Score = 147 bits (162), Expect = 3e-30
Identities = 180/246 (73%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 196124 GACCGTACCGGCACAGGCACTACGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCAA 196183
||||| |||||||| || || ||| ||||| |||| |||| | || ||
Sbjct 421435 GACCGCACCGGCACCGGAACGCTGTCGGTGTTCGGCCATCAGACGCGCCACAATTTGGCC 421494
Query 196184 GACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTG 196243
| |||||||||||| |||| |||||||| || || || ||| | ||||| |||
Sbjct 421495 GCAGGATTCCCGCTGCTCACGACGAAGAAGCTATCCCTCAAATCGATCGTCCATGAGCTG 421554
Query 196244 CTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATC 196303
|| ||||| || || || |||||||||||||||||||| || ||| |||| ||||| |||
Sbjct 421555 CTCTGGTTTCTGAAGGGCGACACCAACATCAAGTACCTCAAGGACCACGGCGTCTCGATC 421614
Query 196304 TGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCGT 196363
||| | ||||||||| |||| ||| | || || ||||| || ||| ||||||||||
Sbjct 421615 TGGGATGAGTGGGCGGACGAGAACGGCGATCTCGGTCCGGTCTATGGTTCGCAGTGGCGT 421674
Query 196364 GAATGG 196369
||||
Sbjct 421675 TCATGG 421680
>seq890
Length=125401
Score = 113 bits (124), Expect = 7e-20
Identities = 175/243 (72%), Gaps = 8/243 (3%)
Strand=Plus/Minus
Query 196124 GACCGTACCGGCACAGGCACTACGTCCTATCTCGG-CGCACAGATGCGCTTCGATCTG-- 196180
||||| |||||||| ||||| | | |||| ||| ||||| ||||| ||||||
Sbjct 47721 GACCGCACCGGCACCGGCACCCTGGGCGTCTTCGGTCGC-CAGATTCGCTTTGATCTGGC 47663
Query 196181 CAAGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCAT-GA 196239
|||| || ||||| | | ||||| ||||| || || |||||||| ||||| ||| ||
Sbjct 47662 CAAG--GGCTTCCCCGTCCTGACCACCAAGAAGCTGCACCTGCGTTCGATCAT-CATCGA 47606
Query 196240 ACTGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTC 196299
||||||||||||||| ||| || ||||||||| | || || || ||||| |||
Sbjct 47605 ACTGCTGTGGTTCCTGCGCGGCGAGACCAACATCGGCTGGCTCAAGGAGAACGGCGTCCG 47546
Query 196300 TATCTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTG 196359
|||||| | || ||||| ||| || | || || || || || || ||||||||
Sbjct 47545 CATCTGGGATGAATGGGCAGACGCCGAGGGCGAGCTTGGCCCCGTCTATGGCAAGCAGTG 47486
Query 196360 GCG 196362
|||
Sbjct 47485 GCG 47483
Score = 95.1 bits (104), Expect = 2e-14
Identities = 129/180 (72%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 196784 TGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCGCGTCT 196843
|| ||||||||||||||||| || || || ||||| || || |||||||||||||| ||
Sbjct 47298 TGCCAGCTGTATCAGCGTAGCGCCGACATCTTCCTGGGCGTGCCGTTCAACATCGCCTCC 47239
Query 196844 TACGCATTGCTGATTCACATGGTGGCGCAACAGGTTAACATGGTACCGGGCGAGTTCGTT 196903
||||| |||||| | |||||||| || || ||| ||||||||||||||
Sbjct 47238 TACGCCCTGCTGACCCTGATGGTGGCCCAGGTCGTGGGTCTGGAGCCGGGCGAGTTCGTC 47179
Query 196904 TGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGAAGAACAGCTG 196963
|| ||| |||| |||| | || || || ||||||||| ||| ||||||
Sbjct 47178 CATACCTTCGGCGACGCCCACCTGTATCTGAACCATCTGGAACAGGCCGAACTTCAGCTG 47119
>seq743
Length=263205
Score = 102 bits (112), Expect = 1e-16
Identities = 203/298 (68%), Gaps = 2/298 (1%)
Strand=Plus/Minus
Query 196066 CATGCATCAGTATCACGAACTCTTACAGCAGGTGCTCAGTATCGGC-CACGACAAAGCTG 196124
|||||||||||||||||| || | ||| | | | || |||| ||| | || | |
Sbjct 73541 CATGCATCAGTATCACGACCTGCTTGAGCGGATTTTGAGCGACGGCGCAC-AGAAGGGCG 73483
Query 196125 ACCGTACCGGCACAGGCACTACGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCAAG 196184
|||| |||||||| || || ||| |||| |||||||||||| | || |
Sbjct 73482 ACCGCACCGGCACGGGTACGCTGTCGGTGTTCGGTCATCAGATGCGCTTCAACCTCGCCG 73423
Query 196185 ACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTGC 196244
||| || ||| || || || || || || | | | || | || |||||||
Sbjct 73422 CCGGTTTTCCGATGACGACGACCAAAAAGCTGCCGTTCAAGGCGATTGTCCACGAACTGC 73363
Query 196245 TGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATCT 196304
||||||| ||| ||| ||||||||| | || ||| | | || |||||| | ||||
Sbjct 73362 TGTGGTTTCTCGCCGGCGACACCAACGTGCGCTATCTGCAGAATAATGGTGTCACCATCT 73303
Query 196305 GGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362
|| ||||||||||| ||| ||| | || || ||||| ||||| |||||||||||
Sbjct 73302 GGGACGAGTGGGCGGACGCCAACGGGGATCTTGGTCCGGTCTACGGCAAGCAGTGGCG 73245
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 771527943224280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |