Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq1482 147 3e-30 seq890 113 7e-20 seq743 102 1e-16 >seq1482 Length=483770 Score = 147 bits (162), Expect = 3e-30 Identities = 180/246 (73%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 196124 GACCGTACCGGCACAGGCACTACGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCAA 196183 ||||| |||||||| || || ||| ||||| |||| |||| | || || Sbjct 421435 GACCGCACCGGCACCGGAACGCTGTCGGTGTTCGGCCATCAGACGCGCCACAATTTGGCC 421494 Query 196184 GACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTG 196243 | |||||||||||| |||| |||||||| || || || ||| | ||||| ||| Sbjct 421495 GCAGGATTCCCGCTGCTCACGACGAAGAAGCTATCCCTCAAATCGATCGTCCATGAGCTG 421554 Query 196244 CTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATC 196303 || ||||| || || || |||||||||||||||||||| || ||| |||| ||||| ||| Sbjct 421555 CTCTGGTTTCTGAAGGGCGACACCAACATCAAGTACCTCAAGGACCACGGCGTCTCGATC 421614 Query 196304 TGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCGT 196363 ||| | ||||||||| |||| ||| | || || ||||| || ||| |||||||||| Sbjct 421615 TGGGATGAGTGGGCGGACGAGAACGGCGATCTCGGTCCGGTCTATGGTTCGCAGTGGCGT 421674 Query 196364 GAATGG 196369 |||| Sbjct 421675 TCATGG 421680 >seq890 Length=125401 Score = 113 bits (124), Expect = 7e-20 Identities = 175/243 (72%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 196124 GACCGTACCGGCACAGGCACTACGTCCTATCTCGG-CGCACAGATGCGCTTCGATCTG-- 196180 ||||| |||||||| ||||| | | |||| ||| ||||| ||||| |||||| Sbjct 47721 GACCGCACCGGCACCGGCACCCTGGGCGTCTTCGGTCGC-CAGATTCGCTTTGATCTGGC 47663 Query 196181 CAAGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCAT-GA 196239 |||| || ||||| | | ||||| ||||| || || |||||||| ||||| ||| || Sbjct 47662 CAAG--GGCTTCCCCGTCCTGACCACCAAGAAGCTGCACCTGCGTTCGATCAT-CATCGA 47606 Query 196240 ACTGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTC 196299 ||||||||||||||| ||| || ||||||||| | || || || ||||| ||| Sbjct 47605 ACTGCTGTGGTTCCTGCGCGGCGAGACCAACATCGGCTGGCTCAAGGAGAACGGCGTCCG 47546 Query 196300 TATCTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTG 196359 |||||| | || ||||| ||| || | || || || || || || |||||||| Sbjct 47545 CATCTGGGATGAATGGGCAGACGCCGAGGGCGAGCTTGGCCCCGTCTATGGCAAGCAGTG 47486 Query 196360 GCG 196362 ||| Sbjct 47485 GCG 47483 Score = 95.1 bits (104), Expect = 2e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 196784 TGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCGCGTCT 196843 || ||||||||||||||||| || || || ||||| || || |||||||||||||| || Sbjct 47298 TGCCAGCTGTATCAGCGTAGCGCCGACATCTTCCTGGGCGTGCCGTTCAACATCGCCTCC 47239 Query 196844 TACGCATTGCTGATTCACATGGTGGCGCAACAGGTTAACATGGTACCGGGCGAGTTCGTT 196903 ||||| |||||| | |||||||| || || ||| |||||||||||||| Sbjct 47238 TACGCCCTGCTGACCCTGATGGTGGCCCAGGTCGTGGGTCTGGAGCCGGGCGAGTTCGTC 47179 Query 196904 TGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGAAGAACAGCTG 196963 || ||| |||| |||| | || || || ||||||||| ||| |||||| Sbjct 47178 CATACCTTCGGCGACGCCCACCTGTATCTGAACCATCTGGAACAGGCCGAACTTCAGCTG 47119 >seq743 Length=263205 Score = 102 bits (112), Expect = 1e-16 Identities = 203/298 (68%), Gaps = 2/298 (1%) Strand=Plus/Minus Query 196066 CATGCATCAGTATCACGAACTCTTACAGCAGGTGCTCAGTATCGGC-CACGACAAAGCTG 196124 |||||||||||||||||| || | ||| | | | || |||| ||| | || | | Sbjct 73541 CATGCATCAGTATCACGACCTGCTTGAGCGGATTTTGAGCGACGGCGCAC-AGAAGGGCG 73483 Query 196125 ACCGTACCGGCACAGGCACTACGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCAAG 196184 |||| |||||||| || || ||| |||| |||||||||||| | || | Sbjct 73482 ACCGCACCGGCACGGGTACGCTGTCGGTGTTCGGTCATCAGATGCGCTTCAACCTCGCCG 73423 Query 196185 ACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTGC 196244 ||| || ||| || || || || || || | | | || | || ||||||| Sbjct 73422 CCGGTTTTCCGATGACGACGACCAAAAAGCTGCCGTTCAAGGCGATTGTCCACGAACTGC 73363 Query 196245 TGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATCT 196304 ||||||| ||| ||| ||||||||| | || ||| | | || |||||| | |||| Sbjct 73362 TGTGGTTTCTCGCCGGCGACACCAACGTGCGCTATCTGCAGAATAATGGTGTCACCATCT 73303 Query 196305 GGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 || ||||||||||| ||| ||| | || || ||||| ||||| ||||||||||| Sbjct 73302 GGGACGAGTGGGCGGACGCCAACGGGGATCTTGGTCCGGTCTACGGCAAGCAGTGGCG 73245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771527943224280