Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq1300 93.3 6e-14 seq966 93.3 6e-14 seq733 84.2 3e-11 >seq1300 Length=673 Score = 93.3 bits (102), Expect = 6e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 142800 TAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGTCCGTTAT 142859 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 145 TAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCGTCGGTTCGACTCCGTCTG 86 Query 142860 TCTCCACCA 142868 |||||||| Sbjct 85 GCTCCACCA 77 >seq966 Length=90452 Score = 93.3 bits (102), Expect = 6e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 142800 TAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGTCCGTTAT 142859 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 90309 TAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCGTCGGTTCGACTCCGTCTG 90368 Query 142860 TCTCCACCA 142868 |||||||| Sbjct 90369 GCTCCACCA 90377 >seq733 Length=265776 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 142792 CGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 ||||| ||||||||||||||||||||| ||| | ||| ||| || |||| |||||||| Sbjct 182023 CGGGGCTTTAGCTCAGTTGGTAGAGCGCTTGCATGGCATGCAAGAGGTCAGCGGTTCGAC 181964 Query 142852 TCCGTTATTCTCCACCAACCA 142872 |||| || ||||||||| || Sbjct 181963 TCCGCTAAGCTCCACCAATCA 181943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691446243783240