Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq318 174 3e-41 >seq318 Length=176241 Score = 174 bits (192), Expect = 3e-41 Identities = 214/288 (74%), Gaps = 11/288 (4%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||||| || |||| | | ||| | |||||||||||| ||||||||||| || Sbjct 11754 TGCTCTTCAGTGAGTGTCGAGATGGGCCGACAATTTTACTTTGAACAAATTAGAGTGCTC 11695 Query 100 AAAGCAGGC------CTTTGCTCGAATACATTA-GCATGGAATAATAGAATAGGACGTGC 152 ||||| ||| | ||| ||||| | |||||||||||||||||| || | | Sbjct 11694 AAAGCGGGCTCAAAACGCCGCTTGAATATTTCGTGCATGGAATAATAGAATATGATCT-C 11636 Query 153 GGTTCTATTTTGTTGGTTTCTAGGAC--CGCCGTAATGATTAATAGGGATAGTCGGGGGT 210 ||||||||||||||||||| || || || ||||||||||||||||||| ||||| Sbjct 11635 GGTTCTATTTTGTTGGTTTTCAGAACTCCGAGGTAATGATTAATAGGGATAACTGGGGGC 11576 Query 211 GTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAA 270 | ||||| || ||||||||||||||||||| ||||| ||| | ||||| Sbjct 11575 ATTCGTATTGCGACGTTAGAGGTGAAATTCTTGGATCGTCGCAAGACGAACATCAGCGAA 11516 Query 271 AGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||| || |||| | ||||||||| ||||| ||||||||||||| || Sbjct 11515 AGCATTTGCCAAAGGTGTTTTCATCAATCA-AGAACGAAAGTTAGAGG 11469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915150624960