Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq318 405 2e-110 >seq318 Length=176241 Score = 405 bits (448), Expect = 2e-110 Identities = 410/529 (78%), Gaps = 26/529 (5%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||| ||||| || || | ||||| || ||||| ||||| | ||||||||| Sbjct 11987 GTACTCATTCCGATTACGAGGCCTCGTAAGAGTCCCGTATCGTTATTTTTCGTCACTACC 12046 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12047 TCCCCGTGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 12106 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct 12107 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTGACAACCATGGT 12166 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 || | | ||||||||||||||||||| |||||| ||||||| || | ||||||| Sbjct 12167 AGTCGCAGAAACTACCATCGAAAGTTGATAAGGCAGACATTTGAAAGATGCGTCGCCGGT 12226 Query 240 TCAAGGCCATGCGATTCG-TTAAGTTATTATGAATCACC------AAGGA-----GCCCC 287 | | ||||||||| | ||||||| || ||| | || || | | | Sbjct 12227 ACTTGACCATGCGATCGGCAAAAGTTATCCAGATTCATCAAAATTAACGACTTCGGACGC 12286 Query 288 GAAG------GGCGTTGGTTTTTTATCTAATAAATACAC----CCCTTCCGAAGTCGGGG 337 || | | || | | |||| |||||||||| ||| ||| || ||| | | Sbjct 12287 GAGGCCCTCCGTCGATTGGTTTTGATCTAATAAAAGCACTCATCCCATCACTGGTCAGAG 12346 Query 338 TTTT--TAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATC 395 || | | |||||||||||||||||||||||||| |||||||| ||| ||| ||| Sbjct 12347 TTCTGATTGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGAGTAAGATC 12406 Query 396 AAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATAC 455 || ||| | ||||||| || |||||||||||| || || | || | | |||| || Sbjct 12407 TAAGGAACCAAAACTGATATATTGAGCCATTCGCGGTATCGCCTTA-ATACGGCTTGCAC 12465 Query 456 TTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 12466 TGAGACATGCATGGCTTAATCTTTGAGACAAGCATATAACTACTGGCAG 12514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510318513920