Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq219 181 8e-41 seq149 158 1e-33 >seq219 Length=603346 Score = 181 bits (200), Expect = 8e-41 Identities = 978/1553 (63%), Gaps = 50/1553 (3%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||| || || ||||| ||||| | || || | | |||||||||||| || Sbjct 377138 ATCTACGGTGAATTGTATAGCATTGGCAGCTGGTTTTGTTCGTAAATAGTACATGCCAGT 377197 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 || || || ||| || || || || || |||| ||||||| ||||||| || || Sbjct 377198 TTTCAGACCCATTTTCCATGCGTAAAAGTGTATGGATGTTAATTTTCCATAATTTGGTTC 377257 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 || ||||| || || || |||||||| || || || | || | || |||||||| Sbjct 377258 TGCGACATGTATGTTAAATGACTGACTTTGGTCTATAAAGGCTCCTCTGTCCGCAGCCAT 377317 Query 65257 GTCAATGATACGACGT-CCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAA 65315 | ||| | | | | | || |||||||| || || || ||||| | | || Sbjct 377318 TTGAATTGT-TGTCTTGACGGAAATCTCCCATACTGTTTTATACAGATCTCTGATGTCTT 377376 Query 65316 TTGGAATCTCCTCAATGTCCTGGACTGAACCA-CGACGTGCAATAATGCGATTACGCATC 65374 | || || | ||||||| ||| | |||||| | || |||||| |||| ||| Sbjct 377377 TGGGTATTGCTTCAATGTTCTGAATGGAACCATTGTTATG-TATAATGAGATTCTTCATT 377435 Query 65375 GACTCTGACCACAAACCCAAATCGAT--AAGATGTTGAACCAAGTGACGATTGATGACTT 65432 || ||| | | || | | || |||| || | ||| | |||| |||| Sbjct 377436 TCTTCATCCCATAGATCCGCTTGAGTCAAATCTGTTAAA--AGATGATGGTTGACCACTT 377493 Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492 | ||||| || |||| || || | || ||||| || || | |||||||| |||| Sbjct 377494 GAAACTCTCCAGACAAAACTCGTCTTTGGTAAATGTTTGATGTAAAAGGTTCAAACGATT 377553 Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGT 65552 || | || ||||| ||||| || || || ||||| ||||| || || | | | || | Sbjct 377554 CATTATTTCCTAGTATTTGAGCGGTGGAGGCAGTGGGCATTGGCGCTAATAGAAGGGAAT 377613 Query 65553 TTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTAT 65612 | || | || | | || |||| || | | | |||| | ||| | | | | | Sbjct 377614 TACGAAGACCATGCTTTGCAATTTTTTCTTTAAGAGCAGCCCAATCCCAAA--GATCTGT 377671 Query 65613 CGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGA 65672 | | | | ||||||||| | || || | || || || || || Sbjct 377672 GGGTGTTTT----GTTCCACATATCGTACTGTAGAATCCCTTGGCTAGCAGGACTTCCCT 377727 Query 65673 GGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAA 65732 | || | ||| || || || || ||| | | ||| || | |||||| || | Sbjct 377728 CGTAAGTGCTGTAAACACCATCTCTCTCGGCTAACTCACAACTTGCCTCGAGCGCACCGT 377787 Query 65733 AATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCA 65792 |||| || || || || || | |||||||| ||||| || ||||| ||||| | Sbjct 377788 AATAGATCGTTTCAAATATTTGCTGATTAAGTAATATTGCCTTCTCACTCTCATACGGTA 377847 Query 65793 TACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGAC 65852 | ||| || ||||| | || || | || ||||| || ||||| ||||| | || Sbjct 377848 ATCTCATAAGAACAAATGCATCCGCTAATCCCTGAACGCCGATACCAATGGGCCTGTGTT 377907 Query 65853 GCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCA 65912 || ||| || | ||||||| |||||||| || | |||| ||| ||||| |||| Sbjct 377908 TCATATTCGAGTTTTTCGCCTCCGGTACAGGATAAAAGTTGACATCAATAATTTTGTTCA 377967 Query 65913 AATTGCGTGTCACCACATGCACGATACGTC--GCAATTGTTCGAAATCAAAATGTTTAGG 65970 ||| |||| | || | | | ||| || || || || |||||| || | ||| Sbjct 377968 GATTTTGTGT-AACAGTTTTA-GTTACTTCTTTCAGTTTTTTGAAATCGAATTTTTT--- 378022 Query 65971 ACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGAC 66030 | | |||||| | || || | || ||||| ||||| || Sbjct 378023 ---------------GTTTTCAACAAACATATTTAGAGCTATTGAGGCGAGATTGCACAC 378067 Query 66031 AGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTAT 66090 || | ||| || | ||||| || |||||||| || |||| ||||||||| || Sbjct 378068 GGCAACCTCATCTTCCGATGTATATTCAACAATTTCAGTACACAAATTACTGCATTTGAT 378127 Query 66091 GGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGG 66150 || || | ||| | ||||||||| || | || |||||||| ||||||| |||||| || Sbjct 378128 AGTTCCAAGATTTTTTTGATTACTTTTTCTGTTACATGCATCTTTGTACAGCATGTATGG 378187 Query 66151 AGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAA------GAGCGCGTGCCTT 66204 ||| || || || ||||| | ||||| ||||| | ||| | |||||||| | | Sbjct 378188 AGTACCAGTTTCGACTTGCGCTTCAATAATGGCTTTCCATAATATCTGAGCGCGTACTTG 378247 Query 66205 CACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTC 66264 | | || || || |||| || | || || | ||| || ||| Sbjct 378248 C------CTGACAAATCTGTTTTCTTGTTCATATTTCTCATACAACGCTTCAAATTCTTC 378301 Query 66265 ACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATC 66324 ||| | || | || | |||||| || || ||||||||||| ||||| ||| Sbjct 378302 ACCGTAACAATCATAAAGCCCTGGACAGTTATGGGGACACATCAGACTCCAATTTTCATT 378361 Query 66325 CTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGC 66384 || || | ||| || | ||| |||||||| || || || || | || | || Sbjct 378362 TCTCTCAACCCTCTTCATGAACAAATCTGGTATCCATAGAGCATAAAACAATTCTCTGGC 378421 Query 66385 TCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCAT 66443 | || || | || ||| || || || || | ||||| ||||| || | || Sbjct 378422 CCTCACTTCTTCCTTTCCTGTG-TTCTTCTTTAAATCCAAAAACTCGAAGATATCAGAAT 378480 Query 66444 GCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGT 66503 |||| || |||| ||||||||||| | ||| |||||| ||| ||||| || || | Sbjct 378481 GCCACGGCTCCACATAGATGGCGAATGCTCCCGGACGTTTATTGCCCCCTTGATCAACAT 378540 Query 66504 AGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGG 66563 | | || || || | || | ||||||||| ||||| || || || | ||||| | Sbjct 378541 ATCTTGCTGTGTTATTATACACCCTCAACATCGGAACGAGTCCATTTGAAATACCATTTG 378600 Query 66564 TGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATA 66616 | || | ||| | |||| || | |||| |||| || ||||||||| Sbjct 378601 TACCAGCTATGTAAGTTCCTTTAGCTCTTATACAATGAATATGAAGACCAATA 378653 >seq149 Length=636072 Score = 158 bits (174), Expect = 1e-33 Identities = 167/220 (76%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 61157 TGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGT 61216 ||| ||| ||||| ||||| | | ||||| ||| || ||||| ||||| ||||||| Sbjct 238919 TGAGTGATTGGGAAAGTTTAAAGGACTGTGAAAGACACTTTATTAAGCATGTATTGGCGT 238978 Query 61217 TCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGG 61276 | ||||| || || || ||||| || ||||||||| | | ||||| ||| | ||||| | Sbjct 238979 TTTTTGCGGCATCAGATGGTATAGTAAATGAGAATCTCGTAGAACGCTTCTCCCAGGAAG 239038 Query 61277 TGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACT 61336 | || ||| | |||||| | || ||||| || ||||||||||| ||||| ||||| |||| Sbjct 239039 TTCAGGTGACTGAGGCGAGATGCTTCTATGGTTTCCAGATTGCTATGGAAAATGTTCACT 239098 Query 61337 CGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 |||| ||||| |||| || ||||| || || ||||| Sbjct 239099 CGGAAATGTATTCACTTCTGATTGATACATATATTAGGGA 239138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397541859282800