Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1685 80.6 5e-13 seq12279 77.0 6e-12 >seq1685 Length=22392 Score = 80.6 bits (88), Expect = 5e-13 Identities = 88/116 (76%), Gaps = 7/116 (6%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTT 98 |||||||||| |||||| |||| ||| | | | ||||||||||| ||||||||||| | Sbjct 7581 TGCCCTTCACCGGGTGTCTCGGGCGGCCGGCAACGTTTACTTTGAACAAATTAGAGTGCT 7522 Query 99 CAAAGCAGG------CCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGAC 148 ||||||||| || || ||||| |||||||||| || ||||||||| Sbjct 7521 CAAAGCAGGTGTATCCCAACGCCTGAATATCGCAGCATGGAATGATGGAATAGGAC 7466 >seq12279 Length=963 Score = 77.0 bits (84), Expect = 6e-12 Identities = 119/166 (72%), Gaps = 7/166 (4%) Strand=Plus/Plus Query 159 ATTTTGTTGGT---TTCTA--GGACC-GCCGTAATGATTAATAGGGATAGTCGGGGGTGT 212 |||||| |||| |||| ||||| | |||||| | ||||| || | |||||| | Sbjct 4 ATTTTGCTGGTCTTTTCTTTTGGACCCGAGGTAATGGTCAATAGAGACGGACGGGGGCAT 63 Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAG 272 ||| | | ||||||||||||||||||| ||||| ||| || ||||| | Sbjct 64 TCGTACTGCGGCGACAGAGGTGAAATTCTTGGACCGCCGCAAGACGAACAACAGCGAAGG 123 Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | || ||||| |||||||| || |||| ||||||||||||| || Sbjct 124 CATTTGCCAAGAATGTTTTCCTTGATCA-AGAACGAAAGTTAGAGG 168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914936413248