Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= AAMG01000345.1 Length=193 Score E Sequences producing significant alignments: (Bits) Value seq13667 125 7e-27 >seq13667 Length=220 Score = 125 bits (138), Expect = 7e-27 Identities = 138/182 (76%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 2 TACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAG 61 ||||||||||||||| ||||||| ||||||| |||||||||| |||| || || | | Sbjct 203 TACCTGAAGCTTAGAGGCTTTTCCTGGAAGCGTGGCATCAACAGCTTCACCACCTTAGTG 144 Query 62 ATAACTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACC 121 |||||| || || | | ||||| |||||||| ||||| ||| ||||| Sbjct 143 G---CTCGTC-TCGTATCTCAGTCTTAGGCGTCCGGATTTTCCTAAACACCCAACCTACA 88 Query 122 ACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCAT 181 ||| || ||||| |||||||||| || ||||||||||||||||||| |||||||| Sbjct 87 TACTTTCACATGGACTACCAACGCCATGCCTGCCTAGCCTTCTCCGTCCCCCCATCGCAG 28 Query 182 TA 183 || Sbjct 27 TA 26 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518255361378