Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq20659 134 2e-29 >seq20659 Length=1327 Score = 134 bits (148), Expect = 2e-29 Identities = 180/246 (73%), Gaps = 6/246 (2%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| |||||||||||||||| || ||||| ||||||| | || || ||| | || Sbjct 550 CTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCGACTTTC-GTGTTTGCAGAGTGCT 608 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||||| ||||||||||| || | ||| | ||| ||| | |||| || Sbjct 609 GTGTTTTTATTAAACAGTCGCAGCCACCGATTTTTTGCAACCCCGTTGGGCTCCCTCTGT 668 Query 127 C---GTTCACCAGCA-GTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATT 182 ||||||| | | |||| |||||||| |||||||||| | || |||||||| || Sbjct 669 TCGAGTTCACCTACTTGGGGCATACCTTCTCC-GAAGTTACGGTGTCAATTTGCCGAGTT 727 Query 183 CCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 |||| ||| ||||| | | | |||||||| || ||| | | |||| |||||||||| Sbjct 728 CCTTCTCCAGAGTTCTCTCAAGCGCCTTAGAATACTCATCTCGCGCACCAGTGTCGGTTT 787 Query 243 ACGGTA 248 ||||| Sbjct 788 GCGGTA 793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694206255673