Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq24035 134 5e-29 >seq24035 Length=260 Score = 134 bits (148), Expect = 5e-29 Identities = 198/275 (72%), Gaps = 19/275 (7%) Strand=Plus/Minus Query 220 AGTTTT-CAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCC 278 |||||| |||| ||| ||||||| |||||| || ||||| ||||| |||| | Sbjct 260 AGTTTTGCAACACTAGTCGGTTCGGACCTCCAGTGCGTGTTACCGCACCTTCATCCTGGC 201 Query 279 CATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACT 338 |||||||||||||| | | ||||||||| | ||| |||||| |||||||||| |||| Sbjct 200 CATGGATAGATCACCTGGTTTCGGGTCTAATCCCTGCAACTCAT-CGCCCTATTCAGACT 142 Query 339 CGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGC--GACACAACGCAAACTCGCAG 396 ||||||||||||| || | || ||| |||| || || || ||| || || ||| Sbjct 141 CGCTTTCGCTACGCCTTCACCTATCGGCTTAAGCTTGCATGATACA---TTAAGTCACAG 85 Query 397 -GCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACG 455 | |||| | ||| ||| |||| |||||| || |||| ||||| || Sbjct 84 ACCCCATTATACAAGAGGTACGCTGTCACC-----CCATAAAG------AGGCTCCAACT 36 Query 456 GATTGTAGGCACATGGTTTCAGGTACTATTTCACT 490 ||||||| ||| ||||||||||||| ||||||| Sbjct 35 GATTGTAAGCATTCGGTTTCAGGTACTGTTTCACT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817076513024