Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq24035 196 1e-47 >seq24035 Length=260 Score = 196 bits (216), Expect = 1e-47 Identities = 211/266 (79%), Gaps = 10/266 (4%) Strand=Plus/Minus Query 29 TTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCC 88 |||| |||| |||||||||||| |||||||| || |||||| ||||| || |||| | Sbjct 258 TTTTGCAACACTAGTCGGTTCGGACCTCCAGTGCGT-GTTACCGCACCTT-CATCCTGGC 201 Query 89 CATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGA 148 ||| ||||||||| || ||||| |||||||| | ||| || ||| ||||||| | ||| Sbjct 200 CAT-GGATAGATCACCTGGTTT-CGGGTCTAAT-CCCTGCAACTCATCGCCCTATTCAGA 144 Query 149 CTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCT 207 |||||||| |||||||||| | ||||| | |||||||| || | | |||||| | Sbjct 143 CTCGCTTT-CGCTACGCCTTCACCTATCGGCTTAAGCTT-GCATGATACATTAAGTCACA 86 Query 208 GACCC-ATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACG 266 ||||| ||||||||| |||||||| ||||||| | |||| |||||| |||| ||||| | Sbjct 85 GACCCCATTATACAAGAGGTACGCTGTCACCCCATAAAG-AGGCTCCAACTGATTGTAAG 27 Query 267 CATACGGTTTCAGGATCTATTTCACT 292 ||| |||||||||| || ||||||| Sbjct 26 CATTCGGTTTCAGGTACTGTTTCACT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241242406784