Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq20659 127 5e-27 >seq20659 Length=1327 Score = 127 bits (140), Expect = 5e-27 Identities = 229/324 (71%), Gaps = 18/324 (6%) Strand=Plus/Plus Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTG 63 |||||| | || ||||||||||||| ||||||||||| || || ||| | | | Sbjct 1012 CTACGCATCTCTGCCTCGCCTTAGGGGCCGACTCACCCTACGCCGATGAACGTTGCGTAG 1071 Query 64 GAACCCTTGGATAATCGGCGGACGGGATTCCCACCCG-TCACACGCTACTCATGCCTGCA 122 ||| ||||| |||||| ||| || ||||| | |||||||||||| | ||| Sbjct 1072 GAAACCTTGCGCTTTCGGCGAGGGGGCTTTTCACCCCCTTTAACGCTACTCATGTCAGCA 1131 Query 123 TTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACGAC 180 ||| |||| | || | ||||| || | || | || |||||| || ||| || Sbjct 1132 TTCGCACTTCTGAT-ACCTCCAGCATCCTTCCAA--GACACCTTCACAGGCTTACAGAAC 1188 Query 181 GCTCCCCTACCCAACCACACAG-GTTGC---CACAGCTTCGGCGGATAACT---TAAGCC 233 |||| |||||| | ||| | | ||| | ||||||||| ||||| | |||| Sbjct 1189 GCTCTCCTACC-ACGCACCTTGCGGTGCATCCGCAGCTTCGG----TAACTGGTTGAGCC 1243 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 ||| ||||| || |||| || ||| ||| ||||||||||||||| ||||| |||| Sbjct 1244 CCGTTACATCTTCCGCGCAGACCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAAGGG 1303 Query 294 TGGCTGCTTCCAAGCCAACCTCCT 317 |||||||||| ||||||||||||| Sbjct 1304 TGGCTGCTTCTAAGCCAACCTCCT 1327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177260839424