Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq12279 127 4e-27 seq12278 87.8 3e-15 seq18981 78.8 2e-12 >seq12279 Length=963 Score = 127 bits (140), Expect = 4e-27 Identities = 124/152 (82%), Gaps = 7/152 (5%) Strand=Plus/Plus Query 66 CGCCGGCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGA-AGTTTGAGGCAATAACAG 123 ||| | |||||||||||||| | |||| || ||||| || ||| ||| ||||||||| Sbjct 815 CGCAGTCTTCTTAGAGGGACAAGCGGCGTCCAGCCGCGTGACAGT--GAG-CAATAACAG 871 Query 124 GTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG 183 ||||||||||||||||||||| ||||||||||||||||||||||||| || || || | Sbjct 872 GTCTGTGATGCCCTTAGATGTCCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCGTG 931 Query 184 -TTCA-TCACCTTGGCCGGAAGGTCTGGGTAA 213 |||| || || || ||| |||| | |||||| Sbjct 932 TTTCACTCTCCCTGTCCGAAAGGACCGGGTAA 963 >seq12278 Length=636 Score = 87.8 bits (96), Expect = 3e-15 Identities = 85/108 (79%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 221 AAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTA 280 || ||| ||||| | ||||| | | | |||||| || | | | ||| |||||| |||| Sbjct 630 AACCTCCTTCGTGGTTGGGATTGGGGACTGCAATGATCCC-CATGAACCAGGAATCCCTA 572 Query 281 GTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| ||||| |||| ||| ||||| |||||||||||||||||||||| Sbjct 571 GTAGGCGCGGGTCACTAGCCCGCGTCGATTACGTCCCTGCCCTTTGTA 524 >seq18981 Length=1491 Score = 78.8 bits (86), Expect = 2e-12 Identities = 55/63 (87%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 266 AACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTT 325 ||| |||||| ||||||| ||||| |||| ||| ||||| ||||||||||||||||||| Sbjct 467 AACCAGGAATCCCTAGTAGGCGCGGGTCACTAGCCCGCGTCGATTACGTCCCTGCCCTTT 526 Query 326 GTA 328 ||| Sbjct 527 GTA 529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946927196928