Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1685 452 1e-124 >seq1685 Length=22392 Score = 452 bits (500), Expect = 1e-124 Identities = 322/370 (87%), Gaps = 10/370 (3%) Strand=Plus/Plus Query 174 TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC----- 228 ||||||||| || ||||| || || || | |||||||||||||| ||| Sbjct 1346 TCCGCTTCACCGAGTAAGTGAAGCGACCATGAAAGTAGTGGTATTTCATCGTCGCTGAGC 1405 Query 229 -CGAA----ACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTA 283 |||| || ||||||||||| |||||||||||| |||| | ||||| | || |||| Sbjct 1406 CCGAAGGCCACATCTCCCACTTATGCTACACCTCTCATGTCACTCCACAATGCCGAACTA 1465 Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343 ||||||||||||||||||||||||||||||||||| | | |||||||||| | || Sbjct 1466 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGACAAAACGAGGCCCGTTCCCCTCGCA 1525 Query 344 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGT 403 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1526 GTGGGTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCGTGCGCGT 1585 Query 404 CACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTT 463 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1586 CACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTT 1645 Query 464 TACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 523 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1646 TACCCGCGCTTCGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 1705 Query 524 TGCGTCAACA 533 ||||||| || Sbjct 1706 TGCGTCAGCA 1715 Score = 147 bits (162), Expect = 7e-33 Identities = 105/121 (87%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| |||| ||||||| |||| |||| | |||||||||||||||||||| Sbjct 1017 CTTTTGCTCTACGGGAGGTTTCTGTCCTCCCTGAGCCAGCCTTAGGACACCTGCGTTATC 1076 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||||||| ||||||||| ||||||||||| | | ||||||| ||| |||||||| Sbjct 1077 GTTTGACAGATGTACCGCCCCAGTCAAACTCCCCATCCGGCAATGTCCTCAGCCCGGATC 1136 Query 127 G 127 | Sbjct 1137 G 1137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634729046048