Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq20659 334 3e-89 seq14232 168 2e-39 seq21168 91.5 5e-16 >seq20659 Length=1327 Score = 334 bits (370), Expect = 3e-89 Identities = 416/566 (73%), Gaps = 23/566 (4%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||||||| |||||||||||||||| | ||| ||| | |||| | || |||| || Sbjct 42 TCGACTTGTCAGTCTCGCAGTCAAGCACGCTTATGCCAATGCACTATCAACACGATTTCC 101 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||| | || | ||||| | | ||||||||||| ||||||||| | ||||||||| Sbjct 102 GACCGTATTTAGCGTACCTTCGAACTCCTCCGTTACACTTTGGGAGGAGA-CCGCCCCAG 160 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATA-TCCA 179 | ||||| ||||||| |||||||||||| || ||| | || ||||||||||| || | Sbjct 161 TCAAACTGCCCACCATACACTGTCCCCAATCCCGATAAGGGACCAAGGTTAGAACCTCAA 220 Query 180 CTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAG 239 || ||| ||||||||||||| | ||||| | |||||||| | | ||| || Sbjct 221 ACACAC-CAGGGTGGTATTTCAACGTTGGCTCCATGAGAACTAGCGTCCTCACTTCAAAG 279 Query 240 TCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC 299 ||||||||||||||||||| | | | || ||||| |||||| ||| ||||| | Sbjct 280 CCTCCCACCTATCCTACACAGATCTGTTCAAAGTCCAATGTAAAGCTACAGTAAAGGTTC 339 Query 300 C-GGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACC 358 ||||||||| |||| | ||||| | | ||||| | || | | ||| ||| | Sbjct 340 ATGGGGTCTTTCCGTCTTTCCGCGGGGAGATTGCATCATCACAAACATTTCAACTTCGCT 399 Query 359 GGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACC 418 | | || ||| ||||||| || ||||||||||||||||||||||||||||||||| Sbjct 400 GAGTCTCTGGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACC 459 Query 419 CGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTT 478 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||| Sbjct 460 CGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGACTT 519 Query 479 CAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACC 538 || | | | || ||| ||| ||| |||| ||||||||||| Sbjct 520 CAGTCAAGAG-CTTGCACCCCA----------TCA--------TTTAATCTTCCAGCACC 560 Query 539 GGGCAGGCGTCAGTCCGTATACCTCG 564 |||||||||||| || ||||| ||| Sbjct 561 GGGCAGGCGTCACACCCTATACGTCG 586 >seq14232 Length=290 Score = 168 bits (186), Expect = 2e-39 Identities = 188/250 (75%), Gaps = 1/250 (0%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||||||| |||||| |||||| || ||| ||| || ||||| || ||||| || Sbjct 42 TCGACTTGTCAGTCTCACAGTCAGGCGGGCTTATGCCATTGCACTCGTCAGCTGATGTCC 101 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||||| |||| ||| | | ||||||||||||| ||||||||| | |||||||||| Sbjct 102 GACCAGCTTGAGCCCACCATCGCGCGCCTCCGTTACCATTTGGGAGG-CGACCGCCCCAG 160 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 | ||||||||| ||| ||| ||||| |||| ||| | ||||| ||||||||||| | Sbjct 161 TCAAACTACCCGCCATGCAGGGTCCCGGACCCGGATAACGGGCCGCGGTTAGATATCGAT 220 Query 181 TACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGT 240 | || || | |||||||||| | |||||| || || ||| ||||| |||||| Sbjct 221 AAGGGGAAGGGCGGTATTTCAAGGGTGCCTCCACGACAGCTGGCGCCGCCGCTTCATAGG 280 Query 241 CTCCCACCTA 250 ||||| |||| Sbjct 281 CTCCCGCCTA 290 >seq21168 Length=247 Score = 91.5 bits (100), Expect = 5e-16 Identities = 147/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 188 AGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCAC 247 || |||||||||||| | |||||| || ||| || ||| || ||||||| Sbjct 210 AGGGTGGTATTTCAAGGTTGCCTCCACCTGATCTGGCGACCAGGCTTCAAAGGCTCCCAC 151 Query 248 CTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTC 306 |||||||||||| | | || || | |||||||| ||| ||||| | ||||||| Sbjct 150 CTATCCTACACATTCAAACTCTAAAATCACTGCCAAGCTACAGTAAAGGTTCACGGGGTC 91 Query 307 TTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGT 366 ||| |||| | | ||| | | | |||| || || | | ||||||| | |||| | Sbjct 90 TTTCCGTCTTTCTGCGGGTACCCGGCATTTTCACCGAGAATTCAATTTCGCGAGGCCCTT 31 Query 367 GGTTGAGACAGCAGGGGAGTCGTTACGCCA 396 |||||||||| | | | ||||||||||||| Sbjct 30 GGTTGAGACACCGGAGAAGTCGTTACGCCA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701909691776