Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2244 104 2e-17 >seq2244 Length=477090 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 66038 TCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCC 66097 || || |||| | | ||||| ||||| || ||||||| ||| ||||| || |||||| Sbjct 403942 TCATCTGGAGAGCTGTACTCAACAATCTCCGTGCACAAATTGCTGCATTTGATCGTGCCC 404001 Query 66098 AAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCG 66157 |||||||| ||||| ||||| || |||||||| || || | ||||||||||| || Sbjct 404002 AAATTCTGCTGATTTGATTTGCGGTTACATGCATCTTTATATAGGATGTACGGAGTTCCC 404061 Query 66158 GTCTCAACTTGGGACTCAATGATGGCGTGCCAAAG 66192 || |||| ||||| || || | ||| |||||| Sbjct 404062 GTTTCAATCTGGGATTCGATTACAGCGAACCAAAG 404096 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 66262 TTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACC 66321 ||| ||||| | |||| | || ||||| | | |||||||| || ||||| || || Sbjct 404260 TTCTCCCCAAGCATCGGCTAAACCCGGACATTCATTCGGACACATAAGAGACCACTCTCC 404319 Query 66322 ATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCG 66381 || ||| || || |||| || |||||||| ||||| || ||||| || | || || Sbjct 404320 GTCTGATTCAACGCGCTGCATGAAAAGATCAGGAATCCAAAGAGCGTAAAACAAGTCACG 404379 Query 66382 TGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGC 66441 ||| || | ||| || | ||| ||| || | || || || ||||| | || | Sbjct 404380 TGCACGGTTCTCTTCTTTTCCGGTATTCTTTTTTAGATCAAGAAATTCAAATACATCCGA 404439 Query 66442 ATGCCATGGTTCCAGGTAGATGGCGAA 66468 |||||||||||| ||||| || || || Sbjct 404440 ATGCCATGGTTCTAGGTAAATTGCAAA 404466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397428448786640