Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq2112 125 4e-27 seq1607 109 3e-22 seq746 87.8 1e-15 seq4394 86.0 3e-15 seq4338 86.0 3e-15 seq3972 86.0 3e-15 seq3436 86.0 3e-15 seq3074 86.0 3e-15 seq3045 86.0 3e-15 seq1785 86.0 3e-15 seq816 86.0 3e-15 seq564 86.0 3e-15 seq4912 75.2 6e-12 >seq2112 Length=6943 Score = 125 bits (138), Expect = 4e-27 Identities = 100/118 (85%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGA-GTCAAAATGATAACATCGCC 59 ||||||||| ||||||||||||| |||||||| | |||| |||| | | ||||| | Sbjct 6609 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTG-GCGAAGTCATTAAAAAAACATTCGC 6551 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | ||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||| Sbjct 6550 CAATCCCTAGTCGGCATCGTTTATGGTTGAGACTACGACGGTATCTAATCGTCTTCGA 6493 >seq1607 Length=7695 Score = 109 bits (120), Expect = 3e-22 Identities = 96/117 (82%), Gaps = 6/117 (5%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| || |||||||| | | || | || || | | Sbjct 6597 GAACCCAAAGACTTTGATTTCTCATACGGTGCCGACTG-GACATAT--ATTCCAGC---C 6650 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| |||||| |||||||| |||||||||||||||||||||||||||||| || Sbjct 6651 GATCCCGAGTCGGTATAGTTTATAGTTAAGACTACGACGGTATCTGATCGTCTTTGA 6707 >seq746 Length=14047 Score = 87.8 bits (96), Expect = 1e-15 Identities = 91/118 (77%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAA-AATGATAACATCGCC 59 ||||||||| ||||| |||| || ||| | || |||| | | ||| | ||||||| | Sbjct 10417 GAACCCAAACGCTTTGGTTTCCCGGAAGCTTCCTGCCGAGCCTACAATAAAAACATCGGC 10476 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| |||| ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 10477 AGATCGCTAGCTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 10534 >seq4394 Length=1147 Score = 86.0 bits (94), Expect = 3e-15 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||||||| |||| || | Sbjct 945 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGTCGAGTCATTGGAGTAACTCCGACG 1004 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| || || ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 1005 GATTGCTGGTTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 1061 >seq4338 Length=1160 Score = 86.0 bits (94), Expect = 3e-15 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||||||| |||| || | Sbjct 1034 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGTCGAGTCATTGGAGTAACTCCGACG 975 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| || || ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 974 GATTGCTGGTTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 918 >seq3972 Length=1262 Score = 86.0 bits (94), Expect = 3e-15 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||||||| |||| || | Sbjct 299 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGTCGAGTCATTGGAGTAACTCCGACG 358 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| || || ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 359 GATTGCTGGTTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 415 >seq3436 Length=1649 Score = 86.0 bits (94), Expect = 3e-15 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||||||| |||| || | Sbjct 1475 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGTCGAGTCATTGGAGTAACTCCGACG 1416 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| || || ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 1415 GATTGCTGGTTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 1359 >seq3074 Length=34404 Score = 86.0 bits (94), Expect = 3e-15 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||||||| |||| || | Sbjct 943 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGTCGAGTCATTGGAGTAACTCCGACG 1002 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| || || ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 1003 GATTGCTGGTTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 1059 >seq3045 Length=1602 Score = 86.0 bits (94), Expect = 3e-15 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||||||| |||| || | Sbjct 694 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGTCGAGTCATTGGAGTAACTCCGACG 635 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| || || ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 634 GATTGCTGGTTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 578 >seq1785 Length=7427 Score = 86.0 bits (94), Expect = 3e-15 Identities = 91/117 (78%), Gaps = 5/117 (4%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| || ||| || | || || |||| |||| Sbjct 2319 GAACCCAAAGACTTTGATTTCTCCTACGGTCCCAAATGAA-CATTTTGATT-CATCT--- 2265 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || || |||||| || ||||| |||||||||| ||||||||||||||||||| || Sbjct 2264 GAATCCGAGTCGGTATCGTTTATAGTTAAGACTAGGACGGTATCTGATCGTCTTTGA 2208 >seq816 Length=34228 Score = 86.0 bits (94), Expect = 3e-15 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||||||| |||| || | Sbjct 27288 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGTCGAGTCATTGGAGTAACTCCGACG 27229 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| || || ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 27228 GATTGCTGGTTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 27172 >seq564 Length=75196 Score = 86.0 bits (94), Expect = 3e-15 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||||||| |||| || | Sbjct 63062 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGTCGAGTCATTGGAGTAACTCCGACG 63003 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| || || ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 63002 GATTGCTGGTTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 62946 >seq4912 Length=1043 Score = 75.2 bits (82), Expect = 6e-12 Identities = 84/111 (76%), Gaps = 1/111 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAG-CGAGTCAAAATGATAACATCGCC 59 |||||||||||||||| |||| || ||| |||| | ||||||| |||| || | Sbjct 116 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCACGTCGAGTCATTGGAGTAACTCCGAC 57 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || || ||||| ||||| ||||| |||| | ||||||||||||| Sbjct 56 GGATTGCTGGTTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCG 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278386464540