Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1496 275 3e-71 seq2112 248 4e-63 seq1607 161 4e-37 seq746 152 2e-34 seq3094 147 9e-33 seq3085 147 9e-33 seq2870 147 9e-33 seq1331 147 9e-33 seq667 147 9e-33 seq1259 143 1e-31 seq4572 138 5e-30 seq2920 127 9e-27 seq1525 127 9e-27 >seq1496 Length=7998 Score = 275 bits (304), Expect = 3e-71 Identities = 244/306 (80%), Gaps = 28/306 (9%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464 |||||||||||| |||||||||||||||||||||||| | |||||||||| ||||| || Sbjct 7443 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCGAGTGTTAGGGTGGTAA 7384 Query 465 ACCCGTGCGCGTAATGAAAGTGAACGG----------------AGGTGGGAACCC----- 503 |||| ||||||||||||||| || || |||| |||| | Sbjct 7383 ACCCCAGCGCGTAATGAAAGTAAAGGGCGCCGTAAGGTGTCTGAGGTAGGAAACTCTCCT 7324 Query 504 -GTGAGGGTG-CACCATCGACCGATCCTGATGTCTTCG----GATGGATTTGAGTAAGAG 557 ||| ||||| ||| ||||||||||| ||| ||||| || ||||||||| ||| Sbjct 7323 TGTGGGGGTGGCACTATCGACCGATCATGAAC-CTTCGTGGTGAAAGATTTGAGTCTGAG 7265 Query 558 CATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAA 617 || | |||||| ||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 7264 CACATATGTTGGTACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAAGCCAGGGGAA 7205 Query 618 ACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAG 677 ||||||||||| ||||| |||| ||||| ||||||||||||||||| || |||||||||| Sbjct 7204 ACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAACTTGGGTATAG 7145 Query 678 GGGCGA 683 |||||| Sbjct 7144 GGGCGA 7139 Score = 176 bits (194), Expect = 2e-41 Identities = 135/160 (84%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || |||| |||||||| | ||||||||||||| Sbjct 7982 GAGTCGCGTTGTTTGGGAATGCAGCGCAAAGTGGGTGGTAAATTCCATCTAAAGCTAAAT 7923 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | ||||||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 7922 ATAAGTGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 7863 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||| || || ||||| || |||||||||| || Sbjct 7862 AGAGAGTTAAAGAGTACCTGAAACTGCTGAAAGGGAATCG 7823 >seq2112 Length=6943 Score = 248 bits (274), Expect = 4e-63 Identities = 240/304 (79%), Gaps = 6/304 (2%) Strand=Plus/Plus Query 382 GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACAT 441 ||||||||| || | || || || ||||||||| |||||||||||||||||||||||| Sbjct 69 GATGCTGGCAAAAGGCTTTCAACCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACAT 128 Query 442 CTATGCGAGTGTTTGGGTGTCAAACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAA 500 ||||||||| |||||| |||||| || |||||| |||| ||| || || || Sbjct 129 GTATGCGAGTTGGTGGGTGGAAAACCCATGAAGCGTAAGGAAACTGACTGG---TGAGAT 185 Query 501 CCCGTGAGGGTGCACCATCGACCGATCCTGA-TGTCTTCGGATGGATTTGAGTAAGAGCA 559 | || | |||| |||||||||| | || | ||| | | || ||||||| ||||| Sbjct 186 GGCCTGTGCCTGCATCATCGACCGACCATGCGTTTCTGCAAAAGG-TTTGAGTGCGAGCA 244 Query 560 TAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAAC 619 || ||||||||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct 245 TACCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAGCAGGGTGAAGCCAGGTGAAAA 304 Query 620 TCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 |||||||||||||| || || ||| ||||||||||| | || | |||||||||||| Sbjct 305 CCTGGTGGAGGCTCGTAGATGTGCTGACGTGCAAATCGCTTTTCGGACTTGGGTATAGGG 364 Query 680 GCGA 683 |||| Sbjct 365 GCGA 368 >seq1607 Length=7695 Score = 161 bits (178), Expect = 4e-37 Identities = 136/166 (82%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 33 CTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAA 92 |||| | |||||| ||||||||||| |||||| |||| |||||| |||| |||||||||| Sbjct 5184 CTTCAAAGAGTCGGGTTGTTTGGGACTGCAGCCCTAAGTGGGAGATAAACTTCTTCTAAA 5125 Query 93 GCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152 ||||||||| | ||||||||||||| ||||||| | || ||||||||||||| || Sbjct 5124 GCTAAATATACACGGGAGACCGATAGCGAACAAGTACTGCGAAGGAAAGATGAAAAGAAC 5065 Query 153 TTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198 |||| |||||| ||||||| || ||||| ||||| | |||||| Sbjct 5064 TTTGAAAAGAGGGTTAAAA--GACTTGAAACCGTTGAGAAGGAAGC 5021 >seq746 Length=14047 Score = 152 bits (168), Expect = 2e-34 Identities = 214/298 (72%), Gaps = 23/298 (8%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC--AAA 465 ||||||||| |||||||||||||||||||||||| | |||||| ||||| | ||| Sbjct 8327 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCGAGCCATTGGGCGGACTAAA 8268 Query 466 CCCGTGCGCGTAATGAAAGTGAACGG--------------AGGTGGGAACCCGTGA--GG 509 ||| | ||| | |||||| ||| || ||| | || ||| | || Sbjct 8267 CCCAAGGGCGCAGTGAAAGCGAAGGGCACGTTGGTGCCTGAGGGGCGATCCCTTTTTTGG 8208 Query 510 GTGCACCATCGAC-CGATCCTGATGTCTTCGGATGGATTTGAGTA---AGAGCATAGCTG 565 | ||| | || | | | | | | | ||| || | ||| | |||||||| | Sbjct 8207 GCGCAGCCCCGGCGCTTTGCAGC-GACCTCGCATCGTGCAGAGCAGCAAGAGCATACACG 8149 Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 ||||||||||||||||||||||||||||||| ||| ||||| ||| |||||| ||| | Sbjct 8148 TTGGGACCCGAAAGATGGTGAACTATGCCTGGCCAGGTTGAAGTCAGGGGAAACCCTGAT 8089 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| || |||| ||||| ||||||||||||||||| | ||||||||||||||| Sbjct 8088 GGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAGCTGGGTATAGGGGCGA 8031 Score = 134 bits (148), Expect = 6e-29 Identities = 118/147 (80%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||||||||| |||||| |||||||| || || | |||||| | | ||| ||||||| Sbjct 519 GAGTCGAGTTGCTTGGGAGTGCAGCTCAAAGTGCGTGGTAAACTCCACGTAAGGCTAAAT 460 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || || ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 459 ATGACCCCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 400 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGT 186 |||||||| || || |||||||| ||| Sbjct 399 AGAGAGTTCAAGAGTACGTGAAACTGT 373 Score = 134 bits (148), Expect = 6e-29 Identities = 118/147 (80%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||||||||| |||||| |||||||| || || | |||||| | | ||| ||||||| Sbjct 8787 GAGTCGAGTTGCTTGGGAGTGCAGCTCAAAGTGCGTGGTAAACTCCACGTAAGGCTAAAT 8728 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || || ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 8727 ATGACCCCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 8668 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGT 186 |||||||| || || |||||||| ||| Sbjct 8667 AGAGAGTTCAAGAGTACGTGAAACTGT 8641 >seq3094 Length=35191 Score = 147 bits (162), Expect = 9e-33 Identities = 104/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||||||||||||||||||||| ||||||||| ||| |||||||| |||||| |||| Sbjct 385 GTTGGGACCCGAAAGATGGTGACCTATGCCTGGCCAGGACGAAGCCAGGGGAAACCCTGG 444 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| ||||||| ||||| ||||||||||||||||| | |||||||||||||||| Sbjct 445 TGGAGGTCCGCAGCGATTCTGACGTGCAAATCGATCGTCGGAGTTGGGTATAGGGGCGA 503 >seq3085 Length=1480 Score = 147 bits (162), Expect = 9e-33 Identities = 104/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||||||||||||||||||||| ||||||||| ||| |||||||| |||||| |||| Sbjct 1235 GTTGGGACCCGAAAGATGGTGACCTATGCCTGGCCAGGACGAAGCCAGGGGAAACCCTGG 1176 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| ||||||| ||||| ||||||||||||||||| | |||||||||||||||| Sbjct 1175 TGGAGGTCCGCAGCGATTCTGACGTGCAAATCGATCGTCGGAGTTGGGTATAGGGGCGA 1117 >seq2870 Length=3523 Score = 147 bits (162), Expect = 9e-33 Identities = 104/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||||||||||||||||||||| ||||||||| ||| |||||||| |||||| |||| Sbjct 2583 GTTGGGACCCGAAAGATGGTGACCTATGCCTGGCCAGGACGAAGCCAGGGGAAACCCTGG 2642 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| ||||||| ||||| ||||||||||||||||| | |||||||||||||||| Sbjct 2643 TGGAGGTCCGCAGCGATTCTGACGTGCAAATCGATCGTCGGAGTTGGGTATAGGGGCGA 2701 >seq1331 Length=8854 Score = 147 bits (162), Expect = 9e-33 Identities = 104/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||||||||||||||||||||| |||||||||| ||| ||||| ||| |||||| ||| Sbjct 1485 GTTGGGACCCGAAAGATGGTGACCTATGCCTGACCAGGTTGAAGTCAGGGGAAACCCTGA 1544 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| ||||||| ||||| ||||||||||||||||| | |||||||||||||||| Sbjct 1545 TGGAGGACCGCAGCGATTCTGACGTGCAAATCGATCGTCGGAGTTGGGTATAGGGGCGA 1603 Score = 127 bits (140), Expect = 9e-27 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | |||||| |||| |||||||||| | ||||||||||||||| Sbjct 782 GAGTCGGGTTGCTTGAGCGTGCAGCCCTAAGCGGGAGGTAAACTCCTTCTAAAGCTAAAT 841 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | | | ||||||||||||| ||||||| | || ||||| ||||||| |||||| | Sbjct 842 ACCGCCACGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGTTGAAAAGAACTTTGAAG 901 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || ||||||| Sbjct 902 AGAGAGTTCAACAGTGCGTGAAA 924 >seq667 Length=64734 Score = 147 bits (162), Expect = 9e-33 Identities = 104/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||||||||||||||||||||| ||||||||| ||| |||||||| |||||| |||| Sbjct 63565 GTTGGGACCCGAAAGATGGTGACCTATGCCTGGCCAGGACGAAGCCAGGGGAAACCCTGG 63624 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| ||||||| ||||| ||||||||||||||||| | |||||||||||||||| Sbjct 63625 TGGAGGTCCGCAGCGATTCTGACGTGCAAATCGATCGTCGGAGTTGGGTATAGGGGCGA 63683 Score = 123 bits (136), Expect = 1e-25 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | |||||| |||| |||||||||| | ||||||| ||||||| Sbjct 62783 GAGTCGGGTTGCTTGAGCGTGCAGCCCTAAGCGGGAGGTAAACTCCTTCTAAGGCTAAAT 62842 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | | ||||||||||||| ||||||| | || ||||| ||||||| ||| || | Sbjct 62843 ATCGCCACGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGTTGAAAAGAACTNTGAAG 62902 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || ||||||| Sbjct 62903 AGAGAGTTCAAGAGTGCGTGAAA 62925 >seq1259 Length=9117 Score = 143 bits (158), Expect = 1e-31 Identities = 103/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||||||||||||||||||||| ||||||||| ||| |||||||| |||||| |||| Sbjct 3853 GTTGGGACCCGAAAGATGGTGACCTATGCCTGGCCAGGACGAAGCCAGGGGAAACCCTGG 3794 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| ||||||| ||||| ||||||||||||||||| | |||| ||||||||||| Sbjct 3793 TGGAGGTCCGCAGCGATTCTGACGTGCAAATCGATCGTCGGAGTTGGATATAGGGGCGA 3735 Score = 127 bits (140), Expect = 9e-27 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | |||||| |||| |||||||||| | ||||||| ||||||| Sbjct 5030 GAGTCGGGTTGCTTGAGCGTGCAGCCCTAAGCGGGAGGTAAACTCCTTCTAAGGCTAAAT 4971 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | | ||||||||||||| ||||||| | || ||||| ||||||| |||||| | Sbjct 4970 ATCGCCACGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGTTGAAAAGAACTTTGAAG 4911 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || ||||||| Sbjct 4910 AGAGAGTTCAAGAGTGCGTGAAA 4888 >seq4572 Length=1111 Score = 138 bits (152), Expect = 5e-30 Identities = 102/119 (86%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||||||| |||||||||||| ||||||||| ||| |||||||| |||||| |||| Sbjct 444 GTTGGGACTTGAAAGATGGTGACCTATGCCTGGCCAGGACGAAGCCAGGGGAAACCCTGG 385 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| ||||||| ||||| ||||||||||||||||| | |||||||||||||||| Sbjct 384 TGGAGGTCCGCAGCGATTCTGACGTGCAAATCGATCGTCGGAGTTGGGTATAGGGGCGA 326 >seq2920 Length=3434 Score = 127 bits (140), Expect = 9e-27 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | |||||| |||| |||||||||| | ||||||| ||||||| Sbjct 884 GAGTCGGGTTGCTTGAGCGTGCAGCCCTAAGCGGGAGGTAAACTCCTTCTAAGGCTAAAT 943 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | | ||||||||||||| ||||||| | || ||||| ||||||| |||||| | Sbjct 944 ATCGCCACGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGTTGAAAAGAACTTTGAAG 1003 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || ||||||| Sbjct 1004 AGAGAGTTCAAGAGTGCGTGAAA 1026 >seq1525 Length=7927 Score = 127 bits (140), Expect = 9e-27 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | |||||| |||| |||||||||| | ||||||| ||||||| Sbjct 360 GAGTCGGGTTGCTTGAGCGTGCAGCCCTAAGCGGGAGGTAAACTCCTTCTAAGGCTAAAT 301 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | | ||||||||||||| ||||||| | || ||||| ||||||| |||||| | Sbjct 300 ATCGCCACGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGTTGAAAAGAACTTTGAAG 241 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || ||||||| Sbjct 240 AGAGAGTTCAAGAGTGCGTGAAA 218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079888760300