Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq3798 95.1 6e-18 seq2920 95.1 6e-18 seq1525 95.1 6e-18 seq1259 95.1 6e-18 seq3649 86.0 3e-15 seq1331 77.0 1e-12 >seq3798 Length=1330 Score = 95.1 bits (104), Expect = 6e-18 Identities = 74/86 (86%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||| |||| ||||||| ||||||||| ||||||||| Sbjct 1144 GGAAAAGAAACTAACAAGGATTCCCTTAGTAGCGGCGAGCGAACAGGGATGAGCCCAGCA 1203 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCG 86 ||||| || ||| || |||| | ||| Sbjct 1204 CCGAA-CCTCGCGCC-CGGTTGAGCG 1227 >seq2920 Length=3434 Score = 95.1 bits (104), Expect = 6e-18 Identities = 74/86 (86%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||| |||| ||||||| ||||||||| ||||||||| Sbjct 652 GGAAAAGAAACTAACAAGGATTCCCTTAGTAGCGGCGAGCGAACAGGGATGAGCCCAGCA 711 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCG 86 ||||| || ||| || |||| | ||| Sbjct 712 CCGAA-CCTCGCGCC-CGGTTGAGCG 735 >seq1525 Length=7927 Score = 95.1 bits (104), Expect = 6e-18 Identities = 74/86 (86%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||| |||| ||||||| ||||||||| ||||||||| Sbjct 592 GGAAAAGAAACTAACAAGGATTCCCTTAGTAGCGGCGAGCGAACAGGGATGAGCCCAGCA 533 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCG 86 ||||| || ||| || |||| | ||| Sbjct 532 CCGAA-CCTCGCGCC-CGGTTGAGCG 509 >seq1259 Length=9117 Score = 95.1 bits (104), Expect = 6e-18 Identities = 74/86 (86%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||| |||| ||||||| ||||||||| ||||||||| Sbjct 5262 GGAAAAGAAACTAACAAGGATTCCCTTAGTAGCGGCGAGCGAACAGGGATGAGCCCAGCA 5203 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCG 86 ||||| || ||| || |||| | ||| Sbjct 5202 CCGAA-CCTCGCGCC-CGGTTGAGCG 5179 >seq3649 Length=1423 Score = 86.0 bits (94), Expect = 3e-15 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCA 57 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| || Sbjct 1289 GGAAAAGAAACTAACAAGGATTCCCTCAGTAACGGCGAGTGAAGCGGGAAGAGCTCA 1345 >seq1331 Length=8854 Score = 77.0 bits (84), Expect = 1e-12 Identities = 56/65 (86%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||| || ||||| | ||||| ||||||| |||||| |||| Sbjct 550 GGAAAAGAAACTAACAAGGATTTCCCCAGTAGCTGCGAGCGAACAGGAAAGAGCTCAGCA 609 Query 61 CCGAA 65 ||||| Sbjct 610 CCGAA 614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230388798240