Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq436 370 4e-100 >seq436 Length=167649 Score = 370 bits (410), Expect = 4e-100 Identities = 415/548 (76%), Gaps = 15/548 (3%) Strand=Plus/Minus Query 52 CGGCATTCGGAGTTTGGTTGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCATCCAGTGC 110 ||| |||||||||||| | || |||||| | | |||||||| | | |||||| Sbjct 100246 CGGTATTCGGAGTTTGCATAGGTTTGGTAAGTCGCCATGACCCCCTAGCCTAAACAGTGC 100187 Query 111 TCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCT 170 |||||| ||| | | || || || || |||||||| |||||| ||||||||||| Sbjct 100186 TCTACCCCCGC-AGGTAATACTTGAGGCACTACCTAAATAGTTTTCGGAGAGAACCAGCT 100128 Query 171 ATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACC 230 || | ||||||| || |||||||||||||| |||||| ||||||||| | |||||||| Sbjct 100127 ATTTCCAAGTTTGTTTAGCCTTTCACCCCTACCCACAGCTCATCCCCTAATTTTTCAACA 100068 Query 231 TAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATC 290 | |||||||||||||||||| || ||||| |||||||||| ||||| |||||| Sbjct 100067 TTAGTGGGTTCGGTCCTCCAGTGCGTGTTACCGCACCTTCAACCTGGCCATGAGTAGATC 100008 Query 291 ACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTAC 350 |||| | ||||||||| | | || ||| || ||||||||||||||||| |||| |||| Sbjct 100007 ACTTGGTTTCGGGTCTACACCCAGCGACTGATTCGCCCTATTCGGACTCGATTTCTCTAC 99948 Query 351 GGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAA 410 |||| ||| | | ||||||||| || || || | || |||| | | |||| | |||| Sbjct 99947 GGCTTCCCTATGC-GGTTAACCTTGCCACTGAATG-TAAGTCGCTGACCCATTATACAAA 99890 Query 411 AGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATG 470 ||| |||| ||||| || || ||| || ||||| || | ||||| ||||| | Sbjct 99889 AGGTACGCAGTCAC--GGAAC----AAG-----TCCGCTCCTACTGTTTGTATGCACACG 99841 Query 471 GTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTT 530 |||||||| |||||||||||||| || ||||| |||||| |||||||||||||||||| Sbjct 99840 GTTTCAGGATCTATTTCACTCCCCTCCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTG 99781 Query 531 GTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACAC 590 || | ||||||||| | |||||||||| ||| || ||||||| ||| |||| || Sbjct 99780 GTTCACTATCGGTCGATATCGAGTATTTAGCCTTGGAGGATGGTCCCCCCATGTTCAGAC 99721 Query 591 GAAATTTC 598 ||||| Sbjct 99720 AGGATTTC 99713 Score = 331 bits (366), Expect = 3e-88 Identities = 410/550 (75%), Gaps = 22/550 (4%) Strand=Plus/Minus Query 52 CGGCATTCGGAGTTTGGT-TGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCATC-CAGT 108 ||| |||||||||||| || ||| |||||| | | |||||||| |||| |||| Sbjct 96376 CGGTATTCGGAGTTTGCAATGGTTT-GGTAAGTCGCCATGACCCCCTAG-CCATAACAGT 96319 Query 109 GCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAG 168 |||||||| ||| | || || || || |||||||| |||||| ||||||||| Sbjct 96318 GCTCTACCCCCGATG-GTAATACTTGAGGCACTACCTAAATAGTTTTCGGAGAGAACCAG 96260 Query 169 CTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAA 228 |||| | ||||||| || ||||||||||||||||||||| |||||| || | ||| ||| Sbjct 96259 CTATTTCCAAGTTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCGCTAATTTTGCAA 96200 Query 229 CCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGA 288 | | ||| ||||||| |||||| | |||| ||||| |||| ||||||||||| Sbjct 96199 CATTAGTCGGTTCGGACCTCCAGCACCTGTTACGGTACCTTCATCCTGGCCATGGATAGA 96140 Query 289 TCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCT 348 |||||| | ||||||||| | | || ||| || ||||||||||||||||| |||| || Sbjct 96139 TCACTTGGTTTCGGGTCTACACCCAGCGACTAATTCGCCCTATTCGGACTCGATTTCTCT 96080 Query 349 ACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCA 408 |||||| ||| | | |||||||||||| || || | || |||| | | |||| | || Sbjct 96079 ACGGCTTCCCTATTC-GGTTAACCTCGCCACTGAATG-TAAGTCGCTGACCCATTATACA 96022 Query 409 AAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACA 468 ||||| |||| ||||| ||| || ||||| || ||||| ||| | Sbjct 96021 AAAGGTACGCAGTCAC------CCT----TGC----GGGCTCCTACTTTTTGTATGCATA 95976 Query 469 TGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTAC 528 ||||||||| |||||||||||||| || ||||| |||||| ||||||||||||||||| Sbjct 95975 CGGTTTCAGGATCTATTTCACTCCCCTCCCGGGGTTCTTTTCGCCTTTCCCTCACGGTAC 95916 Query 529 TTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCAC 588 | || | ||||||||| | |||||||||| ||| || ||||||| ||| ||||| Sbjct 95915 TAGTTCACTATCGGTCGATTACGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAG 95856 Query 589 ACGAAATTTC 598 || ||||| Sbjct 95855 ACAGGATTTC 95846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817505739264