Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq436 412 9e-113 >seq436 Length=167649 Score = 412 bits (456), Expect = 9e-113 Identities = 350/416 (84%), Gaps = 15/416 (4%) Strand=Plus/Minus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| ||||||| |||| |||| |||||||||||| ||||||| Sbjct 96230 CCTATCCACAGCTCAT-CCGCTAA-TTTTGCAACATTAGTCGGTTCGGACCTCCAGCACC 96173 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||| ||||| || |||| |||| ||||||||| | ||||| |||||||| | Sbjct 96172 T-GTTACGGTACCTT-CATCCTGGCCAT-GGATAGATCACTTGGTTT-CGGGTCTACA-C 96118 Query 124 CCAGCGACTAGA-CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAA 182 |||||||||| ||||||| | |||||| ||| | ||||| || |||||||||||||| Sbjct 96117 CCAGCGACTAATTCGCCCTATTCGGACTCGATTT-CTCTACGGCTTCCCTATTCGGTTAA 96059 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 || ||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 96058 CCTC-GCCACTGAATGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCTT-- 96002 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302 | ||||||| ||| ||||| ||||||||||||||||||||||||||||||||| ||| Sbjct 96001 --GCGGGCTCCTACTTTTTGTATGCATACGGTTTCAGGATCTATTTCACTCCCCTC-CCG 95945 Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362 ||||||||||||||||||||||||||||||||||||||||||||| | | |||||||| Sbjct 95944 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCGATTACGAGTATTTA 95885 Query 363 GCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||||||||||||||||||||||||||||||| ||||||||| ||| |||||| Sbjct 95884 GCCTTGGAGGATGGTCCCCCCATATTCAGACAGGATTTCTCGTGTCCCGCCCTACT 95829 Score = 410 bits (454), Expect = 3e-112 Identities = 347/411 (84%), Gaps = 12/411 (3%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| |||| || |||| ||||||||| |||| |||||||||||||||| || ||| Sbjct 100095 CCACAGCTCATCCC-CTAA-TTTTTCAACATTAGTGGGTTCGGTCCTCCAGTGCGT-GTT 100039 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| ||||| ||||||| |||| | |||||| | ||||| |||||||| |||||| Sbjct 100038 ACCGCACCTT-CAACCTGGCCATGAG-TAGATCACTTGGTTT-CGGGTCTACA-CCCAGC 99983 Query 129 GACT-AGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTT 187 |||| | ||||||| | |||||| ||| | ||||| || |||||| ||||||| ||| Sbjct 99982 GACTGATTCGCCCTATTCGGACTCGATTT-CTCTACGGCTTCCCTATGCGGTTAACCTT- 99925 Query 188 GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTG 247 ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 99924 GCCACTGAATGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACGGAACAA-GTC 99866 Query 248 GGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTT 307 ||||| |||| ||||| ||| ||||||||||||||||||||||||||||| |||||||| Sbjct 99865 CGCTCCTACTGTTTGTATGCACACGGTTTCAGGATCTATTTCACTCCCCTC-CCGGGGTT 99807 Query 308 CTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT 367 ||||||||||||||||||||||||| |||||||||||||| | ||||||||||||| Sbjct 99806 CTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATATCGAGTATTTAGCCTT 99747 Query 368 GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||||||||||||||||| |||||||| ||||||||| ||| |||||| Sbjct 99746 GGAGGATGGTCCCCCCATGTTCAGACAGGATTTCTCGTGTCCCGCCCTACT 99696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241535610624