Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq4574 91.5 9e-17 seq3913 91.5 9e-17 seq746 91.5 9e-17 seq3961 86.0 4e-15 seq5020 82.4 5e-14 seq4912 82.4 5e-14 seq4760 82.4 5e-14 seq4411 82.4 5e-14 seq4394 82.4 5e-14 seq4017 82.4 5e-14 seq3649 82.4 5e-14 seq3206 82.4 5e-14 seq3074 82.4 5e-14 seq3045 82.4 5e-14 seq3016 82.4 5e-14 seq816 82.4 5e-14 seq1765 80.6 2e-13 seq1607 71.6 8e-11 >seq4574 Length=1111 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 ||||||| | |||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 461 CTCACTAGGTCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 518 Query 109 TAATACAACGCAAGCT 124 |||| ||| ||||||| Sbjct 519 TAAT-CAATGCAAGCT 533 >seq3913 Length=1282 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| | || || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 978 CTCACTAAAACGTT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 1035 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 1036 TAAT-CAACGCAAGCT 1050 >seq746 Length=14047 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| | || || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 9851 CTCACTAAAACGTT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 9908 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 9909 TAAT-CAACGCAAGCT 9923 >seq3961 Length=1264 Score = 86.0 bits (94), Expect = 4e-15 Identities = 62/69 (90%), Gaps = 2/69 (3%) Strand=Plus/Plus Query 44 AAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAG 103 |||| |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||| Sbjct 929 AAGTCCTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAG 986 Query 104 GGACGTAAT 112 ||||||||| Sbjct 987 GGACGTAAT 995 >seq5020 Length=1027 Score = 82.4 bits (90), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 3/74 (4%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 465 TCCGAAGGC-CTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 409 Query 99 GGCAGGGACGTAAT 112 |||||||||||||| Sbjct 408 GGCAGGGACGTAAT 395 >seq4912 Length=1043 Score = 82.4 bits (90), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 3/74 (4%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 947 TCCGAAGGC-CTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 891 Query 99 GGCAGGGACGTAAT 112 |||||||||||||| Sbjct 890 GGCAGGGACGTAAT 877 >seq4760 Length=1073 Score = 82.4 bits (90), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 3/74 (4%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 709 TCCGAAGGC-CTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 653 Query 99 GGCAGGGACGTAAT 112 |||||||||||||| Sbjct 652 GGCAGGGACGTAAT 639 >seq4411 Length=1143 Score = 82.4 bits (90), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 3/74 (4%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 482 TCCGAAGGC-CTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 538 Query 99 GGCAGGGACGTAAT 112 |||||||||||||| Sbjct 539 GGCAGGGACGTAAT 552 >seq4394 Length=1147 Score = 82.4 bits (90), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 3/74 (4%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 115 TCCGAAGGC-CTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 171 Query 99 GGCAGGGACGTAAT 112 |||||||||||||| Sbjct 172 GGCAGGGACGTAAT 185 >seq4017 Length=1245 Score = 82.4 bits (90), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 3/74 (4%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 913 TCCGAAGGC-CTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 969 Query 99 GGCAGGGACGTAAT 112 |||||||||||||| Sbjct 970 GGCAGGGACGTAAT 983 >seq3649 Length=1423 Score = 82.4 bits (90), Expect = 5e-14 Identities = 73/86 (85%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 ||| ||| ||||||| || |||| || ||||||| ||||||||||| |||||||||| Sbjct 458 TCCCAAA-TTCTCACCGAGTCATT-CAATCGGTAGGT-GCGACGGGCGGTGTGTACAAAG 402 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| ||| ||||||| Sbjct 401 GGCAGGGACGTAAT-CAATGCAAGCT 377 >seq3206 Length=1217 Score = 82.4 bits (90), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 3/74 (4%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 472 TCCGAAGGC-CTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 416 Query 99 GGCAGGGACGTAAT 112 |||||||||||||| Sbjct 415 GGCAGGGACGTAAT 402 >seq3074 Length=34404 Score = 82.4 bits (90), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 3/74 (4%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 113 TCCGAAGGC-CTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 169 Query 99 GGCAGGGACGTAAT 112 |||||||||||||| Sbjct 170 GGCAGGGACGTAAT 183 >seq3045 Length=1602 Score = 82.4 bits (90), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 3/74 (4%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 1524 TCCGAAGGC-CTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 1468 Query 99 GGCAGGGACGTAAT 112 |||||||||||||| Sbjct 1467 GGCAGGGACGTAAT 1454 >seq3016 Length=3219 Score = 82.4 bits (90), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 3/74 (4%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 286 TCCGAAGGC-CTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 342 Query 99 GGCAGGGACGTAAT 112 |||||||||||||| Sbjct 343 GGCAGGGACGTAAT 356 >seq816 Length=34228 Score = 82.4 bits (90), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 3/74 (4%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 438 TCCGAAGGC-CTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 382 Query 99 GGCAGGGACGTAAT 112 |||||||||||||| Sbjct 381 GGCAGGGACGTAAT 368 Score = 82.4 bits (90), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 3/74 (4%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 28118 TCCGAAGGC-CTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 28062 Query 99 GGCAGGGACGTAAT 112 |||||||||||||| Sbjct 28061 GGCAGGGACGTAAT 28048 >seq1765 Length=7411 Score = 80.6 bits (88), Expect = 2e-13 Identities = 56/61 (92%), Gaps = 2/61 (3%) Strand=Plus/Plus Query 64 CATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAGC 123 || ||||||| | ||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 6957 CAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCAAGC 7014 Query 124 T 124 | Sbjct 7015 T 7015 >seq1607 Length=7695 Score = 71.6 bits (78), Expect = 8e-11 Identities = 55/63 (87%), Gaps = 3/63 (5%) Strand=Plus/Plus Query 64 CATTCGGTAGTA--AGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||||| || || |||||||||||| ||||||||| ||||||||| |||| |||||||| Sbjct 6041 CATTCGTTACTACAAGCGACGGGCGGTGTGTACAAACGGCAGGGACATAAT-CAACGCAA 6099 Query 122 GCT 124 ||| Sbjct 6100 GCT 6102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300785375480