Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq2112 107 2e-21 seq746 105 8e-21 seq1607 102 1e-19 seq1785 80.6 3e-13 >seq2112 Length=6943 Score = 107 bits (118), Expect = 2e-21 Identities = 85/101 (84%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||| | |||||||| ||||| | ||||||| | |||||||||||||| |||||| Sbjct 6349 CTACAGACCAACAAGATAGGCCAGA--GTCCTATCGTGTTATTCCATGCTAAAGTATTCT 6292 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAA 106 |||||||||||||||||||||||||||||| ||||| |||| Sbjct 6291 GGCGTAAGCCTGCTTTGAACACTCTAATTTACTCAAAGTAA 6251 >seq746 Length=14047 Score = 105 bits (116), Expect = 8e-21 Identities = 85/101 (84%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 |||||||||||||||| ||| ||||||||||| |||||||||||| | ||||| |||| Sbjct 10683 AAACCAACAAAATAGGAACG-ACGTCCTATTCCATTATTCCATGCACAAATATTCAGGCG 10741 Query 70 TA---AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | ||||||||| || |||||||||||| |||| ||||| Sbjct 10742 TGTCGAGCCTGCTTGGAGCACTCTAATTTTTTCAAAGTAAA 10782 >seq1607 Length=7695 Score = 102 bits (112), Expect = 1e-19 Identities = 102/129 (79%), Gaps = 4/129 (3%) Strand=Plus/Plus Query 11 AACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGT 70 |||||| ||||| |||| | ||||||||| |||||||||||||||||||||||||| Sbjct 6854 AACCAATAAAAT--GGACTTA-GTCCTATTCCATTATTCCATGCTAATGTATTCGGGCTA 6910 Query 71 AAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCG-CACACC 129 || ||||| | |||||||||||||| ||| |||||| ||| | ||| | | ||| Sbjct 6911 AAACCTGCCTGAAACACTCTAATTTTTTCACAGTAAAATGCCTACTCCCTAAGTCGAACC 6970 Query 130 AATGAAGGC 138 | ||||||| Sbjct 6971 AGTGAAGGC 6979 >seq1785 Length=7427 Score = 80.6 bits (88), Expect = 3e-13 Identities = 64/76 (84%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 33 GTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTAAGCCTGCTTTGAACACTCTAA 92 ||| | ||||||||||||||||||||| |||| || || ||||| | ||||||||| Sbjct 2042 GTCATGTTCTATTATTCCATGCTAATGCATTCCGGACAAA-CCTGCCTGGAACACTCTGT 1984 Query 93 TTTTCTCAAGGTAAAA 108 |||||||||||||||| Sbjct 1983 TTTTCTCAAGGTAAAA 1968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595170097524