Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq436 161 2e-37 >seq436 Length=167649 Score = 161 bits (178), Expect = 2e-37 Identities = 289/408 (71%), Gaps = 22/408 (5%) Strand=Plus/Minus Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTG 63 |||||| | || ||||||||||||| ||||||||| | || || ||| | | | Sbjct 100694 CTACGCATCTCTGCCTCGCCTTAGGGGCCGACTCACTCTACGCCGATGAACGTTGCGTAG 100635 Query 64 GAACCCTTG-GATAATCGGCGGACGGGATTCCCACCCG-TCACACGCTACTCATGCCTGC 121 || ||||| | | | ||||| ||| || ||||| | |||||||||||| | || Sbjct 100634 AAAACCTTGCGCTTA-CGGCGAGGGGGCTTTTCACCCCCTTTAACGCTACTCATGTCAGC 100576 Query 122 ATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACGA 179 |||| |||| | || | ||||| || | || ||| | || |||||| | ||| | Sbjct 100575 ATTCGCACTTCTGAT-ACCTCCAGCATCC-GTTACCAGACACCTTCACAGGCCTACAGAA 100518 Query 180 CGCTCCCCTACC-CAACCACACAGGTTGCCA-----CAGCTTCGGCGGATAACT---TAA 230 ||||| |||||| | || | | |||| | ||||||||| ||||| | | Sbjct 100517 CGCTCTCCTACCACTTGCA-ATAAATTGCAAATCCGCAGCTTCGG----TAACTGGCTTA 100463 Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290 |||||| ||||| || |||| | | ||| || |||||||||||||||| ||||| || Sbjct 100462 GCCCCGTTACATCTTCCGCGCAGGACGACTCGATCAGTGAGCTATTACGCTTTCTTTAAA 100403 Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350 |||||||||||| |||||||| ||||| ||| | || |||| || ||||||||| Sbjct 100402 TGATGGCTGCTTCTAAGCCAACATCCTGACTGTTTTAGCCTTCCCACTTCGTTTCCCACT 100343 Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || || |||||| ||||||||| | |||||| ||||||||||| Sbjct 100342 TAGCCA-ATTTTAGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 100296 Score = 159 bits (176), Expect = 8e-37 Identities = 287/408 (70%), Gaps = 21/408 (5%) Strand=Plus/Minus Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTG 63 |||||| | || ||||||||||||| ||||||||||| || || ||| | | | Sbjct 96825 CTACGCATCTCTGCCTCGCCTTAGGGGCCGACTCACCCTACGCCGATGAACGTTGCGTAG 96766 Query 64 GAACCCTTGGATAATCGGCGGACGGGATTCCCACCCG-TCACACGCTACTCATGCCTGCA 122 || ||||| |||||| ||| || ||||| | |||||||||||| | ||| Sbjct 96765 AAAACCTTGCGCTTTCGGCGAGGGGGCTTTTCACCCCCTTTAACGCTACTCATGTCAGCA 96706 Query 123 TTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACGAC 180 ||| |||| | || | ||||| || | | || || |||||| || ||| || Sbjct 96705 TTCGCACTTCTGAT-ACCTCCAGCATGCGTTTACAACCCACCTTCACAGGCTTACAGAAC 96647 Query 181 GCTCCCCTACC-CAACCACACAGGTTGCCA-----CAGCTTCGGCGGATAACT---TAAG 231 |||| |||||| | || | | |||| | ||||||||| ||||| | || Sbjct 96646 GCTCTCCTACCACTTGCA-ATAAATTGCAAATCCGCAGCTTCGG----TAACTGGCTTAG 96592 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| ||||| || |||| | | ||| || |||||||||||||||| ||||| || Sbjct 96591 CCCCGTTACATCTTCCGCGCAGGACGACTCGATCAGTGAGCTATTACGCTTTCTTTAAAT 96532 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 |||||||||||| |||||||| ||||| ||| | || |||| || ||||||||| Sbjct 96531 GATGGCTGCTTCTAAGCCAACATCCTGACTGTTTTAGCCTTCCCACTTCGTTTCCCACTT 96472 Query 352 AGTCACCACTTAGGGG-CCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || || | || |||| ||||||||| | |||||| ||||||||||| Sbjct 96471 AGCCA--ATTTTGGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 96426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177538929664