Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq2112 147 2e-33 seq1607 145 8e-33 seq746 123 3e-26 seq1785 86.0 6e-15 >seq2112 Length=6943 Score = 147 bits (162), Expect = 2e-33 Identities = 140/177 (79%), Gaps = 3/177 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGGAA 73 ||||||||| ||||||||| ||||||||||||| | || |||||| ||| ||||||| Sbjct 6251 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAGGCTTACGCCAGAATACTTTAGCATGGAA 6310 Query 74 TAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAA 133 ||| | ||||||| | | |||| |||| ||| | |||||||| |||||||| || Sbjct 6311 TAACACGATAGGAC--TCTGGCCTATCTTGTTGGTCTGTAGGACCG-GAGTAATGATTAA 6367 Query 134 TACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | ||| ||||||||| | ||||| ||||||| ||||||||||||||||||||| Sbjct 6368 GAGGGACAGTCGGGGGCATTCGTATTTCATTGTCAGAGGTGAAATTCTTGGATTTAT 6424 >seq1607 Length=7695 Score = 145 bits (160), Expect = 8e-33 Identities = 143/180 (79%), Gaps = 6/180 (3%) Strand=Plus/Minus Query 12 TTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGG 71 ||||||| |||||||||||||| ||| | ||||| || || ||||||||||| ||||| Sbjct 6948 TTTTACTGTGAAAAAATTAGAGTGTTTCAGGCAGGTTTTAGCCCGAATACATTAGCATGG 6889 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | | || ||||| | || |||| ||| |||||||| Sbjct 6888 AATAATGGAATAGGAC-TAAG--TCCATTTTATTGG-TTCTTGGA--TTTGGTAATGATT 6835 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTATT 191 |||| ||| ||| ||||| | |||||| ||| |||| |||||||||||||||||||||| Sbjct 6834 AATAGGGACAGTTGGGGGCATTAGTATTTAATAGTCAGAGGTGAAATTCTTGGATTTATT 6775 >seq746 Length=14047 Score = 123 bits (136), Expect = 3e-26 Identities = 134/176 (76%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTT---GCTCGAATACATTACCAT 69 ||||||||||||||||||||| | || |||||||| || ||||| | ||| Sbjct 10782 TTTACTTTGAAAAAATTAGAGTGCTCCAAGCAGGCTCGACACGCCTGAATATTTGTGCAT 10723 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||||| || | ||||||||| ||||| ||| |||||||| Sbjct 10722 GGAATAATGGAATAGGACGT-CGTTCCTATTTTGTTGGTTTTCGGGAATCGACGTAATGA 10664 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | |||| ||| || |||||| | |||||||| | || |||||||||||||||| Sbjct 10663 TTAATAGGGACAGCCGGGGGCATTAGTATTCAGACGACAGAGGTGAAATTCTTGGA 10608 >seq1785 Length=7427 Score = 86.0 bits (94), Expect = 6e-15 Identities = 130/178 (73%), Gaps = 9/178 (5%) Strand=Plus/Plus Query 12 TTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCG-AATACATTACCATG 70 |||||| |||| |||| |||| |||| | ||||| |||| || ||| ||||| |||| Sbjct 1968 TTTTACCTTGAGAAAAACAGAGTGTTCCAGGCAGG--TTTGTCCGGAATGCATTAGCATG 2025 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGAT 130 ||||||||||| | ||| || || |||||| | | || ||| | |||||||| Sbjct 2026 GAATAATAGAACATGAC-TGAAGT-CTATTTATTGG--TTAAAGG--CTTTAGTAATGAT 2079 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 |||| | | ||||||||| | ||| ||| |||| |||||||||||| ||||| Sbjct 2080 TAATAGGAACAGTCGGGGGCATTCGTACTCAGCAGTCAGAGGTGAAATTCTAAGATTT 2137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511974277440