Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq436 242 6e-62 >seq436 Length=167649 Score = 242 bits (268), Expect = 6e-62 Identities = 212/261 (81%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 |||||||||| |||||| ||||| |||||| |||||||| | | || |||| |||| Sbjct 102067 GCTTAGATGCTTTCAGCGGTTATCTCTTCCACACTTAGCTACTCGGCAATGCCACTGGCG 102008 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAG-CTCC 134 ||||| | | |||||||||| ||||| ||||||||||||||||| | ||| || | Sbjct 102007 TGACAACCGATACACCAGAGGTGCGTCCACTCCGGTCCTCTCGTACTAGGAGCAGGCTTC 101948 Query 135 TCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACC 194 ||||||| | | |||||||| |||||||||| ||||||||| ||||||| | |||| Sbjct 101947 -CTCAAATCTGCAGCGCCCACGGAAGATAGGGACCAAACTGTCTCACGACGTTTTAAACC 101889 Query 195 CAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCA 254 |||||| ||| ||||||||| ||||||||||| |||||||||||| || |||||||| Sbjct 101888 CAGCTCACGTACCTCTTTAAATGGCGAACAGCCATACCCTTGGGACCGGCTACAGCCCCA 101829 Query 255 GGATGAGACGAGCCGACATCG 275 |||||||| |||||||||||| Sbjct 101828 GGATGAGATGAGCCGACATCG 101808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780760773096