Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq436 545 8e-153 >seq436 Length=167649 Score = 545 bits (604), Expect = 8e-153 Identities = 426/500 (85%), Gaps = 14/500 (3%) Strand=Plus/Plus Query 1 TCGAGTCCGAACAGGGCGAC--AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCC 58 ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 96087 TCGAGTCCGAATAGGGCGAATTAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTATCC 96146 Query 59 ATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAA 118 ||||||||||||||||| | |||||| | ||||||||||||||| |||||||||| ||| Sbjct 96147 ATGGCCAGGATGAAGGTACCGTAACAGGTGCTGGAGGTCCGAACCGACTAATGTTGCAAA 96206 Query 119 ATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTC 178 ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 96207 ATTAGCGGATGAGCTGTGGATAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTC 96266 Query 179 TCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTAT 238 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 96267 TCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATTACCATCGGGGGTAGAGCACTGTTAT 96326 Query 239 GGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTA 298 |||||||||||||| ||||||||||||||||||||||||||||||| | || || || Sbjct 96327 GGCTAGGGGGTCATGGCGACTTACCAAACCATTGCAAACTCCGAATACCGATGAG---TA 96383 Query 299 CCGC--GGGAGTGAGGGCA-TGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGA 355 | || ||||| || ||| ||||||||| ||||| | | ||||| || || || || Sbjct 96384 CAGCTTGGGAGACAGAGCACCGGGTGCTAACGTCCGGACTCAAGAGGGAAACAACCCAGA 96443 Query 356 CTATCAGCTAAGG-CCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAG 414 | ||||||||| |||| |||| ||||||| | |||||||| || ||||| Sbjct 96444 CCGCCAGCTAAGGTCCCCAAAAT--TGGCTAAGTGGGA--AACGAAGTGGGAAGGCTAAA 96499 Query 415 ACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTA 474 |||| ||||||||||||| |||||||||| ||||||||||| |||||| |||||||| Sbjct 96500 ACAGTCAGGATGTTGGCTTAGAAGCAGCCA-TCATTTAAAGAAAGCGTAATAGCTCACTG 96558 Query 475 GTCGAGGAGTCGGGCGTGGA 494 ||||| ||| ||| ||| Sbjct 96559 ATCGAGTCGTCCTGCGCGGA 96578 Score = 544 bits (602), Expect = 3e-152 Identities = 428/502 (85%), Gaps = 18/502 (4%) Strand=Plus/Plus Query 1 TCGAGTCCGAACAGGGCGA--CAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCC 58 ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| | Sbjct 99957 TCGAGTCCGAATAGGGCGAATCAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACTC 100016 Query 59 ATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAA 118 ||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||| Sbjct 100017 ATGGCCAGGTTGAAGGTGCGGTAACACGCACTGGAGGACCGAACCCACTAATGTTGAAAA 100076 Query 119 ATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTC 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 100077 ATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTC 100136 Query 179 TCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTAT 238 |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct 100137 TCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATTACCTGCGGGGGTAGAGCACTGTTTA 100196 Query 239 GGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAAT-GCGCATCAGTTTT 297 |||||||||||||| ||||||||||||||| |||||||||||||| |||| || | Sbjct 100197 GGCTAGGGGGTCATGGCGACTTACCAAACCTATGCAAACTCCGAATACCGCA-GAG---T 100252 Query 298 ACCGC--GGGAGTGAGGGCA-TGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGG 354 || || ||||| || ||| ||||||||| ||||| | | ||||| || || || | Sbjct 100253 ACAGCTTGGGAGACAGAGCACCGGGTGCTAACGTCCGGACTCAAGAGGGAAACAACCCAG 100312 Query 355 ACTATCAGCTAAGGCCCCGAAA--TGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTA 412 || ||||||||| ||| ||| || ||||||| | |||||||| || |||| Sbjct 100313 ACCGCCAGCTAAGGTCCCTAAAATTG---GCTAAGTGGGA--AACGAAGTGGGAAGGCTA 100367 Query 413 AGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCAC 472 | |||| ||||||||||||| |||||||||| ||||||||||| |||||| ||||||| Sbjct 100368 AAACAGTCAGGATGTTGGCTTAGAAGCAGCCA-TCATTTAAAGAAAGCGTAATAGCTCAC 100426 Query 473 TAGTCGAGGAGTCGGGCGTGGA 494 | ||||| ||| ||| ||| Sbjct 100427 TGATCGAGTCGTCCTGCGCGGA 100448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689512377344