Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq436 414 2e-113 >seq436 Length=167649 Score = 414 bits (458), Expect = 2e-113 Identities = 284/319 (89%), Gaps = 1/319 (0%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 99343 AGTGCACATGGTGGATGCCTTGGCGATATCAGGCGATGAAGGACGTAGTAGCTTGCGATA 99402 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 99403 AGCTGCGGGGAGTGAGCAAACACACATTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 99462 Query 121 CCTTTGGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAAC 180 | | || ||||||||| |||||||||||||||||||||||||||| ||||||||||||| Sbjct 99463 CGTAAGG-TCATTGCATACTGAATACATAGGTATGCAAAGCGAACGTGGCGAACTGAAAC 99521 Query 181 ATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAAT 240 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 99522 ATCTAAGTAGCTACAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAAT 99581 Query 241 GGGATGAGCCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCAT 300 |||| |||||| | || ||| |||||| | || |||||| ||||| Sbjct 99582 GGGAAGAGCCTGCAAGATTTAGCATCTTTGATAATAAAACGGAATGGAAAGTCCGGCCAT 99641 Query 301 AGCGGGTGATAGCCCCGTA 319 || |||||||||||||||| Sbjct 99642 AGAGGGTGATAGCCCCGTA 99660 Score = 107 bits (118), Expect = 4e-21 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 181 ATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAAT 240 |||| ||||||| ||||||||| ||||||||||||||| ||||||| |||||||||||| Sbjct 95654 ATCTCAGTAGCTCGAGGAAAAGACATCAACCGAGATTCCGAAAGTAGCGGCGAGCGAAAT 95713 Query 241 GGGATGAGCCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCAT 300 ||| |||||||||| ||| | ||| ||| |||||| ||||| Sbjct 95714 TGGAGTAGCCTTTACGTTTTAGCATCGTGTATATCAGAACGGAATGGAAAGTCCGGCCAT 95773 Query 301 AGCGGGTGATAGCCCCGTA 319 ||||||||||||||||||| Sbjct 95774 AGCGGGTGATAGCCCCGTA 95792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918352371776