Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq5 127 2e-24 seq18 125 6e-24 >seq5 Length=2511979 Score = 127 bits (140), Expect = 2e-24 Identities = 243/355 (68%), Gaps = 10/355 (3%) Strand=Plus/Minus Query 61288 GAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTAC 61347 || || || |||||||| || ||||| ||||||||||| ||| ||||||| || |||||| Sbjct 2472270 GAAGCTCGCTGTTTCTATGGTTTCCAAATTGCCATGGAAAATATCCACTCTGAAATGTAC 2472211 Query 61348 AGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGA-ACGTGAACGATTGTTCAATGC 61406 || | ||||| || || || |||| ||| || || | | || | || |||||||| Sbjct 2472210 AGCCTGCTCATTGAAACTTATATCAAGGATTCCGCTGAGAGGACAAGGCTT-TTCAATGC 2472152 Query 61407 CATCGAGACGATACCGGCGGTGAAGCG----GAAAGCGGATTGGGCCTTCAATTGGATCA 61462 | ||||| || || || | || |||||| || ||||| | || ||||| Sbjct 2472151 TGTAGAGACAAT----GCCTTGCATCGCTAAGAAAGCTGAATGGGCAATGAAGTGGATTG 2472096 Query 61463 CCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTAT 61522 || || | || | | ||||| || | | || ||||| | || || || | | Sbjct 2472095 GCAATAAAGATGCACCTTACAGTGAAAGAATCGTTGCTTTTGCCGCAGTGGAAGGAATTT 2472036 Query 61523 TTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTC 61582 | ||| ||| || ||||| || ||||||||| | || || || || | ||||| || Sbjct 2472035 TCTTCTCTGGGTCCTTTGCAGCTATCTTTTGGCTTAAAAAGCGAGGTTTGATGCCTGGCT 2471976 Query 61583 TGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 |||||||| ||||| |||| ||| | || ||||| ||||| |||||| || Sbjct 2471975 TGACCTTCTCAAATGAACTGATCTCAAGAGATGAGGGTTTGCATACTGATTTCGC 2471921 >seq18 Length=1446981 Score = 125 bits (138), Expect = 6e-24 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 66245 TAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACAC 66304 || ||| |||||| ||| ||||| || | || | ||| || | || |||||| Sbjct 597700 TATAGGGCTTCGAACTCTTCTCCCCAAGTGTCAGCCAATCCTGGGCATTCATGAGGACAC 597641 Query 66305 ATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGG 66364 ||||| |||||||| ||||| ||| ||||| |||||||| ||||| || |||||||| Sbjct 597640 ATCAGTGACCAATCGCCATCAGATTCAACACGTCGCATAAACAGATCGGGAATCCAGAGA 597581 Query 66365 GCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGG 66424 ||||| || | ||| || || || | || || ||||| |||||| ||| ||||| Sbjct 597580 GCGTAAAATAAATCACGCGCACGATTTTCTTCTTTGCCGGTATTTTTCTTCAAATCGAGA 597521 Query 66425 AACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAA 66468 || || || | || | |||||| ||||||| |||||| || || Sbjct 597520 AAATCGAACACATCAGAATGCCAAGGTTCCAAGTAGATTGCAAA 597477 Score = 120 bits (132), Expect = 2e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66034 TATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGT 66093 || ||| || |||| | | || || ||||| || ||||||| ||| ||||| ||||| Sbjct 598002 TACCTCTTCTGGAGAGCTGTATTCCACAATCTCTGTGCACAAATTGCTGCATTTGATGGT 597943 Query 66094 GCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGT 66153 ||||||||||||||||| |||||| ||||| ||||||||||||| ||||| || || Sbjct 597942 ACCCAAATTCTGTTGATTCGACTTGCGGTTGCAGGCATCCTTGTACAAGATGTATGGGGT 597883 Query 66154 GCCGGTCTCAACTTGGGACTCAAT 66177 ||| || |||| ||| || ||||| Sbjct 597882 GCCAGTTTCAATTTGCGATTCAAT 597859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397542871963040