Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= AAMG01002049.1 Length=571 Score E Sequences producing significant alignments: (Bits) Value seq5502 98.7 3e-18 >seq5502 Length=10115 Score = 98.7 bits (108), Expect = 3e-18 Identities = 158/223 (71%), Gaps = 8/223 (4%) Strand=Plus/Minus Query 144 ATGGGCCCGTCCGGGTTGATCGCGATTCTCGCCGGCTGGTTCACCACGGAAATCGGCCGT 203 ||||| || ||||| || || || || || || || ||||| ||||| ||| |||||||| Sbjct 2483 ATGGGACCTTCCGGATTTATTGCCATGCTTGCGGGATGGTTTACCACAGAAGTCGGCCGT 2424 Query 204 CAGCCGTGGGTGGTCTACGGCCTGATGCGCACGGCGGATGCGT--CCTCCGGGCATAGCC 261 ||||| ||||| ||||||||| | ||||| || |||||| | |||||| | || Sbjct 2423 CAGCCTTGGGTAGTCTACGGCATCATGCGAACCAAGGATGCATTGTCTCCGG---TTTCC 2367 Query 262 TGGTG--CAGATGACGATTACGCTGGTGTTGTTCGTGGTGGTGTACTTCGCGCTGTTCGG 319 | || ||| || | | || ||| | | || || || || |||| | | | || || Sbjct 2366 -GCTGAACAGGTGGGGCTGACCCTGATTATTTTTGTAGTTGTCTACTGTGTGGTATTTGG 2308 Query 320 TGCCGGTCTGGGCTACATGATGCGCCTGGTGCGCAAAGGTCCG 362 | ||| | ||||||| |||||||| ||| |||||| ||| Sbjct 2307 TATCGGAATTTACTACATGTTGCGCCTGATGCACAAAGGCCCG 2265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1724658773376