Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq7343 241 1e-58 >seq7343 Length=933009 Score = 241 bits (266), Expect = 1e-58 Identities = 578/869 (67%), Gaps = 9/869 (1%) Strand=Plus/Plus Query 61066 TTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGG 61125 |||||||| | ||| || || ||| | |||||| || |||||||| || || ||| Sbjct 374410 TTCCCCATTCAATATCCAGACATCTGGGAAAAGTACAAGAAAGCGGAAGCCTCGTTTTGG 374469 Query 61126 ACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGT 61185 || ||| || || || | || ||||| | || | ||| | | | | | | Sbjct 374470 ACCACGGAAGAAGTGGACCTATCTCAAGACCTCGATCATTGGAATAAGCTGACAAACAAT 374529 Query 61186 GAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAAT 61245 ||| || ||||| |||||| |||| || || || || || || || || || || Sbjct 374530 GAAAGGCACTTCATATCGCATGTGCTGGCCTTTTTCGCAGCATCTGATGGCATTGTGAAC 374589 Query 61246 GAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTAC 61305 || ||| | ||||||| ||| ||||| |||||||| | ||||| | |||||||| Sbjct 374590 GAAAATCTTGTGGAACGATTCAGCCAGGAAGTGCAAGTAACCGAGGCTAGATGTTTCTAT 374649 Query 61306 GGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACG 61365 || || || || ||||| || ||| | ||||| || |||||||| | || || || || Sbjct 374650 GGGTTTCAAATAGCCATCGAAAATATTCACTCTGAAATGTACAGCATGCTGATTGAGACC 374709 Query 61366 TACATCAGGGAGCGGG--CGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGG 61423 |||||||| || | | | ||| | ||||| || || || || || | || Sbjct 374710 TACATCAGCGATCCTGTTCAGAAAAGTTTC--TTGTTTAACGCAATTGAAACACTTCCCT 374767 Query 61424 CGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTG 61483 || | | |||||||||| ||||| | || ||||||| | | ||| | ||||||| Sbjct 374768 GTGTAAGGAGGAAAGCGGACTGGGCGCTTAAGTGGATCAGCTCCAAGACGTCCACATTTG 374827 Query 61484 GTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCG 61543 | || || | | || || || | ||||| || |||||||| ||| ||||| Sbjct 374828 GAGAGAGAATCGTCGCTTTCGCAGCTGTCGAAGGAATATTTTTCTCTGGCAGCTTTGCTT 374887 Query 61544 CAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGA 61603 | ||||| ||| | |||||||| || | |||||||| ||||| || ||||| ||| Sbjct 374888 CGATCTTCTGGCTTAAGAAACGCGGCTTGATGCCCGGCCTGACATTTTCAAATGAACTGA 374947 Query 61604 TATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGG 61663 | || | ||||| || |||||||||| ||||| ||| |||||| |||||| | Sbjct 374948 TCTCCAGAGACGAAGGATTGCATTGTGACTTTGCCTGTTTACTATTCTC---CTATCTCG 375004 Query 61664 TGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAAC 61723 | | || || | || | ||| | ||| |||| || || || |||||||| Sbjct 375005 TTCAAAAACCCTCCAAAGAAAGAGTGACGGGCATTATTCGAGATGCAGTTGTTATCGAAC 375064 Query 61724 AGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGT 61783 |||| |||||| | || || |||| || || ||||| ||||| || || |||| Sbjct 375065 AGGAGTTTCTGTCGGATGCACTGCCTGTTAGTCTTATCGGGATGAACTGCAAGCTCATGT 375124 Query 61784 CGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG-ATTTGGGTATGAAGCGGATC 61842 ||||| || |||||||| || ||||| ||| | | | | | || | |||| || | Sbjct 375125 GCCAGTACATAGAATTTGTGGCTGACCGACTGCTAATGGAACTCGGTTGTGAAAAGG-TT 375183 Query 61843 TATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAAT 61902 |||||| | || || || ||||| ||| || || || || |||||||| || Sbjct 375184 TATAATGTCACTAATCCGTTCGATTTTATGTCGATAATATCTACAGAGGGCAAGACCAAC 375243 Query 61903 TTTTTCGAGAAACGTGTAGGCGACTATCA 61931 |||||||| || || ||||| || || Sbjct 375244 TTTTTCGAAAAGAAGGTCGGCGAATACCA 375272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397528326192320