Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1430 170 3e-40 seq1289 170 3e-40 seq954 170 3e-40 seq851 170 3e-40 seq839 170 3e-40 seq829 170 3e-40 seq803 170 3e-40 seq801 170 3e-40 seq789 170 3e-40 seq328 170 3e-40 seq1255 161 1e-37 seq1156 123 4e-26 >seq1430 Length=310067 Score = 170 bits (188), Expect = 3e-40 Identities = 174/221 (79%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||| | |||| ||||||| | ||||||| |||||| | Sbjct 123309 GTACAAAGGGCAGGGACGTAATCAACACAAGCT-GATGACTTGTGCTTACTGGGAATT-C 123252 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| | | |||||||| |||| | ||||| ||||||| || ||||| | || Sbjct 123251 CTCGTTCATGGACAACAATTACAATCCCCAATCCCAATCACGAAAAAGTTTCACTCGGTT 123192 Query 120 ACCCGGACCTGTCGGCCAAGGT-GATAGA--CTCGTTGAATACATCAGTGTAGCGCGCGT 176 |||| || ||| |||| || | | | || ||| | |||||||||||||||| Sbjct 123191 TCCCGCTTCTTTCGAAGTAGGTAGACACATGCACGCTGATTTTTTCAGTGTAGCGCGCGT 123132 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||||||| | ||||||||||||||||||||||||||||||| Sbjct 123131 GCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 123091 >seq1289 Length=313075 Score = 170 bits (188), Expect = 3e-40 Identities = 174/221 (79%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||| | |||| ||||||| | ||||||| |||||| | Sbjct 294970 GTACAAAGGGCAGGGACGTAATCAACACAAGCT-GATGACTTGTGCTTACTGGGAATT-C 294913 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| | | |||||||| |||| | ||||| ||||||| || ||||| | || Sbjct 294912 CTCGTTCATGGACAACAATTACAATCCCCAATCCCAATCACGAAAAAGTTTCACTCGGTT 294853 Query 120 ACCCGGACCTGTCGGCCAAGGT-GATAGA--CTCGTTGAATACATCAGTGTAGCGCGCGT 176 |||| || ||| |||| || | | | || ||| | |||||||||||||||| Sbjct 294852 TCCCGCTTCTTTCGAAGTAGGTAGACACATGCACGCTGATTTTTTCAGTGTAGCGCGCGT 294793 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||||||| | ||||||||||||||||||||||||||||||| Sbjct 294792 GCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 294752 >seq954 Length=66514 Score = 170 bits (188), Expect = 3e-40 Identities = 174/221 (79%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||| | |||| ||||||| | ||||||| |||||| | Sbjct 49614 GTACAAAGGGCAGGGACGTAATCAACACAAGCT-GATGACTTGTGCTTACTGGGAATT-C 49557 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| | | |||||||| |||| | ||||| ||||||| || ||||| | || Sbjct 49556 CTCGTTCATGGACAACAATTACAATCCCCAATCCCAATCACGAAAAAGTTTCACTCGGTT 49497 Query 120 ACCCGGACCTGTCGGCCAAGGT-GATAGA--CTCGTTGAATACATCAGTGTAGCGCGCGT 176 |||| || ||| |||| || | | | || ||| | |||||||||||||||| Sbjct 49496 TCCCGCTTCTTTCGAAGTAGGTAGACACATGCACGCTGATTTTTTCAGTGTAGCGCGCGT 49437 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||||||| | ||||||||||||||||||||||||||||||| Sbjct 49436 GCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 49396 >seq851 Length=522413 Score = 170 bits (188), Expect = 3e-40 Identities = 174/221 (79%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||| | |||| ||||||| | ||||||| |||||| | Sbjct 511691 GTACAAAGGGCAGGGACGTAATCAACACAAGCT-GATGACTTGTGCTTACTGGGAATT-C 511634 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| | | |||||||| |||| | ||||| ||||||| || ||||| | || Sbjct 511633 CTCGTTCATGGACAACAATTACAATCCCCAATCCCAATCACGAAAAAGTTTCACTCGGTT 511574 Query 120 ACCCGGACCTGTCGGCCAAGGT-GATAGA--CTCGTTGAATACATCAGTGTAGCGCGCGT 176 |||| || ||| |||| || | | | || ||| | |||||||||||||||| Sbjct 511573 TCCCGCTTCTTTCGAAGTAGGTAGACACATGCACGCTGATTTTTTCAGTGTAGCGCGCGT 511514 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||||||| | ||||||||||||||||||||||||||||||| Sbjct 511513 GCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 511473 >seq839 Length=72495 Score = 170 bits (188), Expect = 3e-40 Identities = 174/221 (79%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||| | |||| ||||||| | ||||||| |||||| | Sbjct 65088 GTACAAAGGGCAGGGACGTAATCAACACAAGCT-GATGACTTGTGCTTACTGGGAATT-C 65145 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| | | |||||||| |||| | ||||| ||||||| || ||||| | || Sbjct 65146 CTCGTTCATGGACAACAATTACAATCCCCAATCCCAATCACGAAAAAGTTTCACTCGGTT 65205 Query 120 ACCCGGACCTGTCGGCCAAGGT-GATAGA--CTCGTTGAATACATCAGTGTAGCGCGCGT 176 |||| || ||| |||| || | | | || ||| | |||||||||||||||| Sbjct 65206 TCCCGCTTCTTTCGAAGTAGGTAGACACATGCACGCTGATTTTTTCAGTGTAGCGCGCGT 65265 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||||||| | ||||||||||||||||||||||||||||||| Sbjct 65266 GCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 65306 >seq829 Length=1740722 Score = 170 bits (188), Expect = 3e-40 Identities = 174/221 (79%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||| | |||| ||||||| | ||||||| |||||| | Sbjct 987058 GTACAAAGGGCAGGGACGTAATCAACACAAGCT-GATGACTTGTGCTTACTGGGAATT-C 987001 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| | | |||||||| |||| | ||||| ||||||| || ||||| | || Sbjct 987000 CTCGTTCATGGACAACAATTACAATCCCCAATCCCAATCACGAAAAAGTTTCACTCGGTT 986941 Query 120 ACCCGGACCTGTCGGCCAAGGT-GATAGA--CTCGTTGAATACATCAGTGTAGCGCGCGT 176 |||| || ||| |||| || | | | || ||| | |||||||||||||||| Sbjct 986940 TCCCGCTTCTTTCGAAGTAGGTAGACACATGCACGCTGATTTTTTCAGTGTAGCGCGCGT 986881 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||||||| | ||||||||||||||||||||||||||||||| Sbjct 986880 GCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 986840 >seq803 Length=117798 Score = 170 bits (188), Expect = 3e-40 Identities = 174/221 (79%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||| | |||| ||||||| | ||||||| |||||| | Sbjct 107427 GTACAAAGGGCAGGGACGTAATCAACACAAGCT-GATGACTTGTGCTTACTGGGAATT-C 107370 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| | | |||||||| |||| | ||||| ||||||| || ||||| | || Sbjct 107369 CTCGTTCATGGACAACAATTACAATCCCCAATCCCAATCACGAAAAAGTTTCACTCGGTT 107310 Query 120 ACCCGGACCTGTCGGCCAAGGT-GATAGA--CTCGTTGAATACATCAGTGTAGCGCGCGT 176 |||| || ||| |||| || | | | || ||| | |||||||||||||||| Sbjct 107309 TCCCGCTTCTTTCGAAGTAGGTAGACACATGCACGCTGATTTTTTCAGTGTAGCGCGCGT 107250 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||||||| | ||||||||||||||||||||||||||||||| Sbjct 107249 GCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 107209 >seq801 Length=119047 Score = 170 bits (188), Expect = 3e-40 Identities = 174/221 (79%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||| | |||| ||||||| | ||||||| |||||| | Sbjct 107453 GTACAAAGGGCAGGGACGTAATCAACACAAGCT-GATGACTTGTGCTTACTGGGAATT-C 107396 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| | | |||||||| |||| | ||||| ||||||| || ||||| | || Sbjct 107395 CTCGTTCATGGACAACAATTACAATCCCCAATCCCAATCACGAAAAAGTTTCACTCGGTT 107336 Query 120 ACCCGGACCTGTCGGCCAAGGT-GATAGA--CTCGTTGAATACATCAGTGTAGCGCGCGT 176 |||| || ||| |||| || | | | || ||| | |||||||||||||||| Sbjct 107335 TCCCGCTTCTTTCGAAGTAGGTAGACACATGCACGCTGATTTTTTCAGTGTAGCGCGCGT 107276 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||||||| | ||||||||||||||||||||||||||||||| Sbjct 107275 GCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 107235 >seq789 Length=136861 Score = 170 bits (188), Expect = 3e-40 Identities = 174/221 (79%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||| | |||| ||||||| | ||||||| |||||| | Sbjct 90801 GTACAAAGGGCAGGGACGTAATCAACACAAGCT-GATGACTTGTGCTTACTGGGAATT-C 90744 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| | | |||||||| |||| | ||||| ||||||| || ||||| | || Sbjct 90743 CTCGTTCATGGACAACAATTACAATCCCCAATCCCAATCACGAAAAAGTTTCACTCGGTT 90684 Query 120 ACCCGGACCTGTCGGCCAAGGT-GATAGA--CTCGTTGAATACATCAGTGTAGCGCGCGT 176 |||| || ||| |||| || | | | || ||| | |||||||||||||||| Sbjct 90683 TCCCGCTTCTTTCGAAGTAGGTAGACACATGCACGCTGATTTTTTCAGTGTAGCGCGCGT 90624 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||||||| | ||||||||||||||||||||||||||||||| Sbjct 90623 GCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 90583 >seq328 Length=1149099 Score = 170 bits (188), Expect = 3e-40 Identities = 174/221 (79%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||| | |||| ||||||| | ||||||| |||||| | Sbjct 906491 GTACAAAGGGCAGGGACGTAATCAACACAAGCT-GATGACTTGTGCTTACTGGGAATT-C 906548 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| | | |||||||| |||| | ||||| ||||||| || ||||| | || Sbjct 906549 CTCGTTCATGGACAACAATTACAATCCCCAATCCCAATCACGAAAAAGTTTCACTCGGTT 906608 Query 120 ACCCGGACCTGTCGGCCAAGGT-GATAGA--CTCGTTGAATACATCAGTGTAGCGCGCGT 176 |||| || ||| |||| || | | | || ||| | |||||||||||||||| Sbjct 906609 TCCCGCTTCTTTCGAAGTAGGTAGACACATGCACGCTGATTTTTTCAGTGTAGCGCGCGT 906668 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||||||| | ||||||||||||||||||||||||||||||| Sbjct 906669 GCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 906709 >seq1255 Length=349262 Score = 161 bits (178), Expect = 1e-37 Identities = 173/221 (78%), Gaps = 7/221 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||| | |||| ||||||| | ||||||| |||||| | Sbjct 324239 GTACAAAGGGCAGGGACGTAATCAACACAAGCT-GATGACTTGTGCTTACTGGGAATT-C 324182 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| | | |||||||| |||| | ||||| ||||||| || ||||| | || Sbjct 324181 CTCGTTCATGGACAACAATTACAATCCCCAATCCCAATCACGAAAAAGTTTCACTCGGTT 324122 Query 120 ACCCGGACCTGTCGGCCAAGGT-GATAGA--CTCGTTGAATACATCAGTGTAGCGCGCGT 176 |||| || ||| |||| || | | | || ||| | |||||||||||||||| Sbjct 324121 TCCCGCTTCTTTCGAAGTAGGTAGACACATGCACGCTGATTTTTTCAGTGTAGCGCGCGT 324062 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||||||| | |||||||| |||||||||||||||||||||| Sbjct 324061 GCGGCCCCGGACATCTAA-GGCATCACAGACCTGTTATTGC 324022 >seq1156 Length=376316 Score = 123 bits (136), Expect = 4e-26 Identities = 142/185 (77%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 37 TGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCC 96 ||||| | ||||||| |||||| ||||||| | | |||||||| |||| | ||||| Sbjct 23467 TGACTTGTGCTTACT-GGAATT-CCTCGTTCATGGACAACAATTACAATCCCCAATCCCA 23410 Query 97 ATCACGATGAAATTTCAAA-GATTACCCGGACCTGTCGGCCAAGGT-GATAGA--CTCGT 152 ||||||| || ||||| | || |||| || ||| |||| || | | | || Sbjct 23409 ATCACGAAAAAGTTTCACTCGGTTTCCCGCTTCTTTCGAAGTAGGTAGACACATGCACGC 23350 Query 153 TGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTT 212 ||| | ||||||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct 23349 TGATTTTTTCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTT 23290 Query 213 ATTGC 217 ||||| Sbjct 23289 ATTGC 23285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751987571790