Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq1430 71.6 8e-11 seq1289 71.6 8e-11 seq1255 71.6 8e-11 seq954 71.6 8e-11 seq851 71.6 8e-11 seq839 71.6 8e-11 seq829 71.6 8e-11 seq803 71.6 8e-11 seq801 71.6 8e-11 seq789 71.6 8e-11 seq328 71.6 8e-11 >seq1430 Length=310067 Score = 71.6 bits (78), Expect = 8e-11 Identities = 88/118 (75%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATC-GCC 59 ||||| ||| |||||| |||| || ||| ||| ||||||| | |||| || | | Sbjct 122775 GAACCGAAAAACTTTGGTTTCCCGGAAGCCGCCAGCCGAGTCATACA-ATAAACTCTGGC 122717 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| || || ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 122716 TGATTGCTGGTTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 122659 >seq1289 Length=313075 Score = 71.6 bits (78), Expect = 8e-11 Identities = 88/118 (75%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATC-GCC 59 ||||| ||| |||||| |||| || ||| ||| ||||||| | |||| || | | Sbjct 294436 GAACCGAAAAACTTTGGTTTCCCGGAAGCCGCCAGCCGAGTCATACA-ATAAACTCTGGC 294378 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| || || ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 294377 TGATTGCTGGTTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 294320 >seq1255 Length=349262 Score = 71.6 bits (78), Expect = 8e-11 Identities = 88/118 (75%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATC-GCC 59 ||||| ||| |||||| |||| || ||| ||| ||||||| | |||| || | | Sbjct 323708 GAACCGAAAAACTTTGGTTTCCCGGAAGCCGCCAGCCGAGTCATACA-ATAAACTCTGGC 323650 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| || || ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 323649 TGATTGCTGGTTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 323592 >seq954 Length=66514 Score = 71.6 bits (78), Expect = 8e-11 Identities = 88/118 (75%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATC-GCC 59 ||||| ||| |||||| |||| || ||| ||| ||||||| | |||| || | | Sbjct 49080 GAACCGAAAAACTTTGGTTTCCCGGAAGCCGCCAGCCGAGTCATACA-ATAAACTCTGGC 49022 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| || || ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 49021 TGATTGCTGGTTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 48964 >seq851 Length=522413 Score = 71.6 bits (78), Expect = 8e-11 Identities = 88/118 (75%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATC-GCC 59 ||||| ||| |||||| |||| || ||| ||| ||||||| | |||| || | | Sbjct 511157 GAACCGAAAAACTTTGGTTTCCCGGAAGCCGCCAGCCGAGTCATACA-ATAAACTCTGGC 511099 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| || || ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 511098 TGATTGCTGGTTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 511041 >seq839 Length=72495 Score = 71.6 bits (78), Expect = 8e-11 Identities = 88/118 (75%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATC-GCC 59 ||||| ||| |||||| |||| || ||| ||| ||||||| | |||| || | | Sbjct 65622 GAACCGAAAAACTTTGGTTTCCCGGAAGCCGCCAGCCGAGTCATACA-ATAAACTCTGGC 65680 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| || || ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 65681 TGATTGCTGGTTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 65738 >seq829 Length=1740722 Score = 71.6 bits (78), Expect = 8e-11 Identities = 88/118 (75%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATC-GCC 59 ||||| ||| |||||| |||| || ||| ||| ||||||| | |||| || | | Sbjct 986524 GAACCGAAAAACTTTGGTTTCCCGGAAGCCGCCAGCCGAGTCATACA-ATAAACTCTGGC 986466 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| || || ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 986465 TGATTGCTGGTTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 986408 >seq803 Length=117798 Score = 71.6 bits (78), Expect = 8e-11 Identities = 88/118 (75%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATC-GCC 59 ||||| ||| |||||| |||| || ||| ||| ||||||| | |||| || | | Sbjct 106893 GAACCGAAAAACTTTGGTTTCCCGGAAGCCGCCAGCCGAGTCATACA-ATAAACTCTGGC 106835 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| || || ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 106834 TGATTGCTGGTTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 106777 >seq801 Length=119047 Score = 71.6 bits (78), Expect = 8e-11 Identities = 88/118 (75%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATC-GCC 59 ||||| ||| |||||| |||| || ||| ||| ||||||| | |||| || | | Sbjct 106919 GAACCGAAAAACTTTGGTTTCCCGGAAGCCGCCAGCCGAGTCATACA-ATAAACTCTGGC 106861 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| || || ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 106860 TGATTGCTGGTTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 106803 >seq789 Length=136861 Score = 71.6 bits (78), Expect = 8e-11 Identities = 88/118 (75%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATC-GCC 59 ||||| ||| |||||| |||| || ||| ||| ||||||| | |||| || | | Sbjct 90267 GAACCGAAAAACTTTGGTTTCCCGGAAGCCGCCAGCCGAGTCATACA-ATAAACTCTGGC 90209 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| || || ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 90208 TGATTGCTGGTTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 90151 >seq328 Length=1149099 Score = 71.6 bits (78), Expect = 8e-11 Identities = 88/118 (75%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATC-GCC 59 ||||| ||| |||||| |||| || ||| ||| ||||||| | |||| || | | Sbjct 907025 GAACCGAAAAACTTTGGTTTCCCGGAAGCCGCCAGCCGAGTCATACA-ATAAACTCTGGC 907083 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| || || ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 907084 TGATTGCTGGTTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 907141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278395547340