Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1430 168 1e-39 seq1289 168 1e-39 seq1156 168 1e-39 seq851 168 1e-39 seq839 168 1e-39 seq829 168 1e-39 seq801 168 1e-39 seq789 168 1e-39 seq328 168 1e-39 seq954 165 1e-38 seq803 165 1e-38 >seq1430 Length=310067 Score = 168 bits (186), Expect = 1e-39 Identities = 190/251 (76%), Gaps = 5/251 (2%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATACATTAG 127 || ||||||||||||||||||||||| ||||||||||| | | || |||||| | | Sbjct 122409 ACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCATCAATCGCCTGAATACTGTTG 122468 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAAT 187 ||||||||||| ||||||||| | |||||| || ||||||| | | | || ||||| Sbjct 122469 CATGGAATAATGGAATAGGACCTT-GGTTCTGTTCTGTTGGTCTTCGGAATCGAGGTAAT 122527 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||| ||||| | ||||| | |||| | | |||||||||||||||||| Sbjct 122528 GATTAAGAGGGACGGACGGGGACATTAGTACTGCGGCGATAGAGGTGAAATTCTTGGACC 122587 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 | ||||||||| |||||||| || |||| | |||||||||||||| ||||| Sbjct 122588 GCCGCATGACTAACTAAAGCGAAAGCATTTGTCAAGAACGTTTTCATTAATCA-AGAACG 122646 Query 308 AAAGTTAGGGG 318 |||||||| || Sbjct 122647 AAAGTTAGAGG 122657 >seq1289 Length=313075 Score = 168 bits (186), Expect = 1e-39 Identities = 190/251 (76%), Gaps = 5/251 (2%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATACATTAG 127 || ||||||||||||||||||||||| ||||||||||| | | || |||||| | | Sbjct 294070 ACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCATCAATCGCCTGAATACTGTTG 294129 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAAT 187 ||||||||||| ||||||||| | |||||| || ||||||| | | | || ||||| Sbjct 294130 CATGGAATAATGGAATAGGACCTT-GGTTCTGTTCTGTTGGTCTTCGGAATCGAGGTAAT 294188 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||| ||||| | ||||| | |||| | | |||||||||||||||||| Sbjct 294189 GATTAAGAGGGACGGACGGGGACATTAGTACTGCGGCGATAGAGGTGAAATTCTTGGACC 294248 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 | ||||||||| |||||||| || |||| | |||||||||||||| ||||| Sbjct 294249 GCCGCATGACTAACTAAAGCGAAAGCATTTGTCAAGAACGTTTTCATTAATCA-AGAACG 294307 Query 308 AAAGTTAGGGG 318 |||||||| || Sbjct 294308 AAAGTTAGAGG 294318 >seq1156 Length=376316 Score = 168 bits (186), Expect = 1e-39 Identities = 190/251 (76%), Gaps = 5/251 (2%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATACATTAG 127 || ||||||||||||||||||||||| ||||||||||| | | || |||||| | | Sbjct 22606 ACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCATCAATCGCCTGAATACTGTTG 22665 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAAT 187 ||||||||||| ||||||||| | |||||| || ||||||| | | | || ||||| Sbjct 22666 CATGGAATAATGGAATAGGACCTT-GGTTCTGTTCTGTTGGTCTTCGGAATCGAGGTAAT 22724 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||| ||||| | ||||| | |||| | | |||||||||||||||||| Sbjct 22725 GATTAAGAGGGACGGACGGGGACATTAGTACTGCGGCGATAGAGGTGAAATTCTTGGACC 22784 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 | ||||||||| |||||||| || |||| | |||||||||||||| ||||| Sbjct 22785 GCCGCATGACTAACTAAAGCGAAAGCATTTGTCAAGAACGTTTTCATTAATCA-AGAACG 22843 Query 308 AAAGTTAGGGG 318 |||||||| || Sbjct 22844 AAAGTTAGAGG 22854 >seq851 Length=522413 Score = 168 bits (186), Expect = 1e-39 Identities = 190/251 (76%), Gaps = 5/251 (2%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATACATTAG 127 || ||||||||||||||||||||||| ||||||||||| | | || |||||| | | Sbjct 510791 ACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCATCAATCGCCTGAATACTGTTG 510850 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAAT 187 ||||||||||| ||||||||| | |||||| || ||||||| | | | || ||||| Sbjct 510851 CATGGAATAATGGAATAGGACCTT-GGTTCTGTTCTGTTGGTCTTCGGAATCGAGGTAAT 510909 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||| ||||| | ||||| | |||| | | |||||||||||||||||| Sbjct 510910 GATTAAGAGGGACGGACGGGGACATTAGTACTGCGGCGATAGAGGTGAAATTCTTGGACC 510969 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 | ||||||||| |||||||| || |||| | |||||||||||||| ||||| Sbjct 510970 GCCGCATGACTAACTAAAGCGAAAGCATTTGTCAAGAACGTTTTCATTAATCA-AGAACG 511028 Query 308 AAAGTTAGGGG 318 |||||||| || Sbjct 511029 AAAGTTAGAGG 511039 >seq839 Length=72495 Score = 168 bits (186), Expect = 1e-39 Identities = 190/251 (76%), Gaps = 5/251 (2%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATACATTAG 127 || ||||||||||||||||||||||| ||||||||||| | | || |||||| | | Sbjct 65988 ACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCATCAATCGCCTGAATACTGTTG 65929 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAAT 187 ||||||||||| ||||||||| | |||||| || ||||||| | | | || ||||| Sbjct 65928 CATGGAATAATGGAATAGGACCTT-GGTTCTGTTCTGTTGGTCTTCGGAATCGAGGTAAT 65870 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||| ||||| | ||||| | |||| | | |||||||||||||||||| Sbjct 65869 GATTAAGAGGGACGGACGGGGACATTAGTACTGCGGCGATAGAGGTGAAATTCTTGGACC 65810 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 | ||||||||| |||||||| || |||| | |||||||||||||| ||||| Sbjct 65809 GCCGCATGACTAACTAAAGCGAAAGCATTTGTCAAGAACGTTTTCATTAATCA-AGAACG 65751 Query 308 AAAGTTAGGGG 318 |||||||| || Sbjct 65750 AAAGTTAGAGG 65740 >seq829 Length=1740722 Score = 168 bits (186), Expect = 1e-39 Identities = 190/251 (76%), Gaps = 5/251 (2%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATACATTAG 127 || ||||||||||||||||||||||| ||||||||||| | | || |||||| | | Sbjct 986158 ACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCATCAATCGCCTGAATACTGTTG 986217 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAAT 187 ||||||||||| ||||||||| | |||||| || ||||||| | | | || ||||| Sbjct 986218 CATGGAATAATGGAATAGGACCTT-GGTTCTGTTCTGTTGGTCTTCGGAATCGAGGTAAT 986276 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||| ||||| | ||||| | |||| | | |||||||||||||||||| Sbjct 986277 GATTAAGAGGGACGGACGGGGACATTAGTACTGCGGCGATAGAGGTGAAATTCTTGGACC 986336 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 | ||||||||| |||||||| || |||| | |||||||||||||| ||||| Sbjct 986337 GCCGCATGACTAACTAAAGCGAAAGCATTTGTCAAGAACGTTTTCATTAATCA-AGAACG 986395 Query 308 AAAGTTAGGGG 318 |||||||| || Sbjct 986396 AAAGTTAGAGG 986406 >seq801 Length=119047 Score = 168 bits (186), Expect = 1e-39 Identities = 190/251 (76%), Gaps = 5/251 (2%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATACATTAG 127 || ||||||||||||||||||||||| ||||||||||| | | || |||||| | | Sbjct 106553 ACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCATCAATCGCCTGAATACTGTTG 106612 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAAT 187 ||||||||||| ||||||||| | |||||| || ||||||| | | | || ||||| Sbjct 106613 CATGGAATAATGGAATAGGACCTT-GGTTCTGTTCTGTTGGTCTTCGGAATCGAGGTAAT 106671 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||| ||||| | ||||| | |||| | | |||||||||||||||||| Sbjct 106672 GATTAAGAGGGACGGACGGGGACATTAGTACTGCGGCGATAGAGGTGAAATTCTTGGACC 106731 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 | ||||||||| |||||||| || |||| | |||||||||||||| ||||| Sbjct 106732 GCCGCATGACTAACTAAAGCGAAAGCATTTGTCAAGAACGTTTTCATTAATCA-AGAACG 106790 Query 308 AAAGTTAGGGG 318 |||||||| || Sbjct 106791 AAAGTTAGAGG 106801 >seq789 Length=136861 Score = 168 bits (186), Expect = 1e-39 Identities = 190/251 (76%), Gaps = 5/251 (2%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATACATTAG 127 || ||||||||||||||||||||||| ||||||||||| | | || |||||| | | Sbjct 89901 ACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCATCAATCGCCTGAATACTGTTG 89960 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAAT 187 ||||||||||| ||||||||| | |||||| || ||||||| | | | || ||||| Sbjct 89961 CATGGAATAATGGAATAGGACCTT-GGTTCTGTTCTGTTGGTCTTCGGAATCGAGGTAAT 90019 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||| ||||| | ||||| | |||| | | |||||||||||||||||| Sbjct 90020 GATTAAGAGGGACGGACGGGGACATTAGTACTGCGGCGATAGAGGTGAAATTCTTGGACC 90079 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 | ||||||||| |||||||| || |||| | |||||||||||||| ||||| Sbjct 90080 GCCGCATGACTAACTAAAGCGAAAGCATTTGTCAAGAACGTTTTCATTAATCA-AGAACG 90138 Query 308 AAAGTTAGGGG 318 |||||||| || Sbjct 90139 AAAGTTAGAGG 90149 >seq328 Length=1149099 Score = 168 bits (186), Expect = 1e-39 Identities = 190/251 (76%), Gaps = 5/251 (2%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATACATTAG 127 || ||||||||||||||||||||||| ||||||||||| | | || |||||| | | Sbjct 907391 ACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCATCAATCGCCTGAATACTGTTG 907332 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAAT 187 ||||||||||| ||||||||| | |||||| || ||||||| | | | || ||||| Sbjct 907331 CATGGAATAATGGAATAGGACCTT-GGTTCTGTTCTGTTGGTCTTCGGAATCGAGGTAAT 907273 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||| ||||| | ||||| | |||| | | |||||||||||||||||| Sbjct 907272 GATTAAGAGGGACGGACGGGGACATTAGTACTGCGGCGATAGAGGTGAAATTCTTGGACC 907213 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 | ||||||||| |||||||| || |||| | |||||||||||||| ||||| Sbjct 907212 GCCGCATGACTAACTAAAGCGAAAGCATTTGTCAAGAACGTTTTCATTAATCA-AGAACG 907154 Query 308 AAAGTTAGGGG 318 |||||||| || Sbjct 907153 AAAGTTAGAGG 907143 >seq954 Length=66514 Score = 165 bits (182), Expect = 1e-38 Identities = 189/251 (75%), Gaps = 5/251 (2%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATACATTAG 127 || ||||||||||||||||||||||| |||| |||||| | | || |||||| | | Sbjct 48714 ACGTTTACTTTGAAAAAATTAGAGTGCTCAATGCAGGCATCAATCGCCTGAATACTGTTG 48773 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAAT 187 ||||||||||| ||||||||| | |||||| || ||||||| | | | || ||||| Sbjct 48774 CATGGAATAATGGAATAGGACCTT-GGTTCTGTTCTGTTGGTCTTCGGAATCGAGGTAAT 48832 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||| ||||| | ||||| | |||| | | |||||||||||||||||| Sbjct 48833 GATTAAGAGGGACGGACGGGGACATTAGTACTGCGGCGATAGAGGTGAAATTCTTGGACC 48892 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 | ||||||||| |||||||| || |||| | |||||||||||||| ||||| Sbjct 48893 GCCGCATGACTAACTAAAGCGAAAGCATTTGTCAAGAACGTTTTCATTAATCA-AGAACG 48951 Query 308 AAAGTTAGGGG 318 |||||||| || Sbjct 48952 AAAGTTAGAGG 48962 >seq803 Length=117798 Score = 165 bits (182), Expect = 1e-38 Identities = 189/251 (75%), Gaps = 5/251 (2%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT---GCTCGAATACATTAG 127 || ||||||||||||||||||||||| ||||||||||| | || |||||| | | Sbjct 106527 ACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCATCAAGCGCCTGAATACTGTTG 106586 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAAT 187 ||||||||||| ||||||||| | |||||| || ||||||| | | | || ||||| Sbjct 106587 CATGGAATAATGGAATAGGACCTT-GGTTCTGTTCTGTTGGTCTTCGGAATCGAGGTAAT 106645 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||| ||||| | ||||| | |||| | | |||||||||||||||||| Sbjct 106646 GATTAAGAGGGACGGACGGGGACATTAGTACTGCGGCGATAGAGGTGAAATTCTTGGACC 106705 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 | ||||||||| |||||||| || |||| | |||||||||||||| ||||| Sbjct 106706 GCCGCATGACTAACTAAAGCGAAAGCATTTGTCAAGAACGTTTTCATTAATCA-AGAACG 106764 Query 308 AAAGTTAGGGG 318 |||||||| || Sbjct 106765 AAAGTTAGAGG 106775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915184386688