Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1430 242 6e-62 seq1289 242 6e-62 seq1156 242 6e-62 seq851 242 6e-62 seq839 242 6e-62 seq829 242 6e-62 seq803 242 6e-62 seq801 242 6e-62 seq789 242 6e-62 seq328 242 6e-62 seq954 237 3e-60 seq1255 233 3e-59 >seq1430 Length=310067 Score = 242 bits (268), Expect = 6e-62 Identities = 207/249 (83%), Gaps = 10/249 (4%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| || Sbjct 123147 TCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 123089 Query 76 AAACTTCCATT-GGCTGGAA-GCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133 || ||| ||||| || ||| | ||||||||||||||| | | |||| | | Sbjct 123088 TT--TTTCATACGGCTGAAACGCCGTTTGTCCCTCTAAGAAGCGTTCGAACAAC-ACAAC 123032 Query 134 CGATGGGG----CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 | || |||||||| ||| || ||||||||||||||||||||||||||||||| Sbjct 123031 GGGTGTTCAACACTATTTAGTAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAA 122972 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 122971 ATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACTGAATCAAGAAAGAGCTCT 122912 Query 250 CAATCTGTC 258 |||||||| Sbjct 122911 TAATCTGTC 122903 >seq1289 Length=313075 Score = 242 bits (268), Expect = 6e-62 Identities = 207/249 (83%), Gaps = 10/249 (4%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| || Sbjct 294808 TCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 294750 Query 76 AAACTTCCATT-GGCTGGAA-GCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133 || ||| ||||| || ||| | ||||||||||||||| | | |||| | | Sbjct 294749 TT--TTTCATACGGCTGAAACGCCGTTTGTCCCTCTAAGAAGCGTTCGAACAAC-ACAAC 294693 Query 134 CGATGGGG----CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 | || |||||||| ||| || ||||||||||||||||||||||||||||||| Sbjct 294692 GGGTGTTCAACACTATTTAGTAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAA 294633 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 294632 ATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACTGAATCAAGAAAGAGCTCT 294573 Query 250 CAATCTGTC 258 |||||||| Sbjct 294572 TAATCTGTC 294564 >seq1156 Length=376316 Score = 242 bits (268), Expect = 6e-62 Identities = 207/249 (83%), Gaps = 11/249 (4%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| || Sbjct 23341 TCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 23283 Query 76 AAACTTCCATT-GGCTGGAA-GCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133 || ||| ||||| || ||| | ||||||||||||||| | | |||| | | Sbjct 23282 T---TTTCATACGGCTGAAACGCCGTTTGTCCCTCTAAGAAGCGTTCGAACAAC-ACAAC 23227 Query 134 CGATGGGG----CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 | || |||||||| ||| || ||||||||||||||||||||||||||||||| Sbjct 23226 GGGTGTTCAACACTATTTAGTAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAA 23167 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 23166 ATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACTGAATCAAGAAAGAGCTCT 23107 Query 250 CAATCTGTC 258 |||||||| Sbjct 23106 TAATCTGTC 23098 >seq851 Length=522413 Score = 242 bits (268), Expect = 6e-62 Identities = 207/249 (83%), Gaps = 10/249 (4%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| || Sbjct 511529 TCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 511471 Query 76 AAACTTCCATT-GGCTGGAA-GCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133 || ||| ||||| || ||| | ||||||||||||||| | | |||| | | Sbjct 511470 TT--TTTCATACGGCTGAAACGCCGTTTGTCCCTCTAAGAAGCGTTCGAACAAC-ACAAC 511414 Query 134 CGATGGGG----CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 | || |||||||| ||| || ||||||||||||||||||||||||||||||| Sbjct 511413 GGGTGTTCAACACTATTTAGTAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAA 511354 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 511353 ATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACTGAATCAAGAAAGAGCTCT 511294 Query 250 CAATCTGTC 258 |||||||| Sbjct 511293 TAATCTGTC 511285 >seq839 Length=72495 Score = 242 bits (268), Expect = 6e-62 Identities = 207/249 (83%), Gaps = 10/249 (4%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| || Sbjct 65250 TCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 65308 Query 76 AAACTTCCATT-GGCTGGAA-GCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133 || ||| ||||| || ||| | ||||||||||||||| | | |||| | | Sbjct 65309 TT--TTTCATACGGCTGAAACGCCGTTTGTCCCTCTAAGAAGCGTTCGAACAAC-ACAAC 65365 Query 134 CGATGGGG----CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 | || |||||||| ||| || ||||||||||||||||||||||||||||||| Sbjct 65366 GGGTGTTCAACACTATTTAGTAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAA 65425 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 65426 ATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACTGAATCAAGAAAGAGCTCT 65485 Query 250 CAATCTGTC 258 |||||||| Sbjct 65486 TAATCTGTC 65494 >seq829 Length=1740722 Score = 242 bits (268), Expect = 6e-62 Identities = 207/249 (83%), Gaps = 10/249 (4%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| || Sbjct 986896 TCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 986838 Query 76 AAACTTCCATT-GGCTGGAA-GCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133 || ||| ||||| || ||| | ||||||||||||||| | | |||| | | Sbjct 986837 TT--TTTCATACGGCTGAAACGCCGTTTGTCCCTCTAAGAAGCGTTCGAACAAC-ACAAC 986781 Query 134 CGATGGGG----CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 | || |||||||| ||| || ||||||||||||||||||||||||||||||| Sbjct 986780 GGGTGTTCAACACTATTTAGTAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAA 986721 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 986720 ATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACTGAATCAAGAAAGAGCTCT 986661 Query 250 CAATCTGTC 258 |||||||| Sbjct 986660 TAATCTGTC 986652 >seq803 Length=117798 Score = 242 bits (268), Expect = 6e-62 Identities = 207/249 (83%), Gaps = 10/249 (4%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| || Sbjct 107265 TCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 107207 Query 76 AAACTTCCATT-GGCTGGAA-GCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133 || ||| ||||| || ||| | ||||||||||||||| | | |||| | | Sbjct 107206 TT--TTTCATACGGCTGAAACGCCGTTTGTCCCTCTAAGAAGCGTTCGAACAAC-ACAAC 107150 Query 134 CGATGGGG----CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 | || |||||||| ||| || ||||||||||||||||||||||||||||||| Sbjct 107149 GGGTGTTCAACACTATTTAGTAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAA 107090 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 107089 ATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACTGAATCAAGAAAGAGCTCT 107030 Query 250 CAATCTGTC 258 |||||||| Sbjct 107029 TAATCTGTC 107021 >seq801 Length=119047 Score = 242 bits (268), Expect = 6e-62 Identities = 207/249 (83%), Gaps = 10/249 (4%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| || Sbjct 107291 TCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 107233 Query 76 AAACTTCCATT-GGCTGGAA-GCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133 || ||| ||||| || ||| | ||||||||||||||| | | |||| | | Sbjct 107232 TT--TTTCATACGGCTGAAACGCCGTTTGTCCCTCTAAGAAGCGTTCGAACAAC-ACAAC 107176 Query 134 CGATGGGG----CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 | || |||||||| ||| || ||||||||||||||||||||||||||||||| Sbjct 107175 GGGTGTTCAACACTATTTAGTAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAA 107116 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 107115 ATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACTGAATCAAGAAAGAGCTCT 107056 Query 250 CAATCTGTC 258 |||||||| Sbjct 107055 TAATCTGTC 107047 >seq789 Length=136861 Score = 242 bits (268), Expect = 6e-62 Identities = 207/249 (83%), Gaps = 10/249 (4%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| || Sbjct 90639 TCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 90581 Query 76 AAACTTCCATT-GGCTGGAA-GCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133 || ||| ||||| || ||| | ||||||||||||||| | | |||| | | Sbjct 90580 TT--TTTCATACGGCTGAAACGCCGTTTGTCCCTCTAAGAAGCGTTCGAACAAC-ACAAC 90524 Query 134 CGATGGGG----CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 | || |||||||| ||| || ||||||||||||||||||||||||||||||| Sbjct 90523 GGGTGTTCAACACTATTTAGTAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAA 90464 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 90463 ATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACTGAATCAAGAAAGAGCTCT 90404 Query 250 CAATCTGTC 258 |||||||| Sbjct 90403 TAATCTGTC 90395 >seq328 Length=1149099 Score = 242 bits (268), Expect = 6e-62 Identities = 207/249 (83%), Gaps = 10/249 (4%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| || Sbjct 906653 TCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 906711 Query 76 AAACTTCCATT-GGCTGGAA-GCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133 || ||| ||||| || ||| | ||||||||||||||| | | |||| | | Sbjct 906712 TT--TTTCATACGGCTGAAACGCCGTTTGTCCCTCTAAGAAGCGTTCGAACAAC-ACAAC 906768 Query 134 CGATGGGG----CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 | || |||||||| ||| || ||||||||||||||||||||||||||||||| Sbjct 906769 GGGTGTTCAACACTATTTAGTAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAA 906828 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 906829 ATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACTGAATCAAGAAAGAGCTCT 906888 Query 250 CAATCTGTC 258 |||||||| Sbjct 906889 TAATCTGTC 906897 >seq954 Length=66514 Score = 237 bits (262), Expect = 3e-60 Identities = 206/249 (83%), Gaps = 10/249 (4%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| || Sbjct 49452 TCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 49394 Query 76 AAACTTCCATT-GGCTGGAA-GCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133 || ||| || || || ||| | ||||||||||||||| | | |||| | | Sbjct 49393 TT--TTTCATACGGATGAAACGCCGTTTGTCCCTCTAAGAAGCGTTCGAACAAC-ACAAC 49337 Query 134 CGATGGGG----CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 | || |||||||| ||| || ||||||||||||||||||||||||||||||| Sbjct 49336 GGGTGTTCAACACTATTTAGTAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAA 49277 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 49276 ATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACTGAATCAAGAAAGAGCTCT 49217 Query 250 CAATCTGTC 258 |||||||| Sbjct 49216 TAATCTGTC 49208 >seq1255 Length=349262 Score = 233 bits (258), Expect = 3e-59 Identities = 206/249 (83%), Gaps = 11/249 (4%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||| | |||||||||| |||||||||||||||||||| || Sbjct 324077 TCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGG-CATCACAGACCTGTTATTGC-TC 324020 Query 76 AAACTTCCATT-GGCTGGAA-GCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133 || ||| ||||| || ||| | ||||||||||||||| | | |||| | | Sbjct 324019 TT--TTTCATACGGCTGAAACGCCGTTTGTCCCTCTAAGAAGCGTTCGAACAAC-ACAAC 323963 Query 134 CGATGGGG----CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 | || |||||||| ||| || ||||||||||||||||||||||||||||||| Sbjct 323962 GGGTGTTCAACACTATTTAGTAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAA 323903 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 323902 ATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACTGAATCAAGAAAGAGCTCT 323843 Query 250 CAATCTGTC 258 |||||||| Sbjct 323842 TAATCTGTC 323834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796786831386