Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq1430 93.3 4e-17 seq1289 93.3 4e-17 seq1156 93.3 4e-17 seq851 93.3 4e-17 seq839 93.3 4e-17 seq829 93.3 4e-17 seq801 93.3 4e-17 seq789 93.3 4e-17 seq328 93.3 4e-17 seq954 89.7 5e-16 seq803 89.7 5e-16 >seq1430 Length=310067 Score = 93.3 bits (102), Expect = 4e-17 Identities = 130/179 (73%), Gaps = 5/179 (3%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT---TTGCTCGAATACATTAC 66 || ||||||||||||||||||||| | ||||||||||| | | || |||||| | Sbjct 122409 ACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCATCAATCGCCTGAATACTGTTG 122468 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 ||||||||||| ||||||||| | |||||| || ||| ||| | | ||| |||| Sbjct 122469 CATGGAATAATGGAATAGGACCT-TGGTTCTGTTCTGTTGGTCT-TCGGAATCGAGGTAA 122526 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 |||| || | ||| | ||||| | |||| | | | |||||||||||||||| Sbjct 122527 TGATTAAGAGGGACGGACGGGGACATTAGTACTGCGGCGATAGAGGTGAAATTCTTGGA 122585 >seq1289 Length=313075 Score = 93.3 bits (102), Expect = 4e-17 Identities = 130/179 (73%), Gaps = 5/179 (3%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT---TTGCTCGAATACATTAC 66 || ||||||||||||||||||||| | ||||||||||| | | || |||||| | Sbjct 294070 ACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCATCAATCGCCTGAATACTGTTG 294129 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 ||||||||||| ||||||||| | |||||| || ||| ||| | | ||| |||| Sbjct 294130 CATGGAATAATGGAATAGGACCT-TGGTTCTGTTCTGTTGGTCT-TCGGAATCGAGGTAA 294187 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 |||| || | ||| | ||||| | |||| | | | |||||||||||||||| Sbjct 294188 TGATTAAGAGGGACGGACGGGGACATTAGTACTGCGGCGATAGAGGTGAAATTCTTGGA 294246 >seq1156 Length=376316 Score = 93.3 bits (102), Expect = 4e-17 Identities = 130/179 (73%), Gaps = 5/179 (3%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT---TTGCTCGAATACATTAC 66 || ||||||||||||||||||||| | ||||||||||| | | || |||||| | Sbjct 22606 ACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCATCAATCGCCTGAATACTGTTG 22665 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 ||||||||||| ||||||||| | |||||| || ||| ||| | | ||| |||| Sbjct 22666 CATGGAATAATGGAATAGGACCT-TGGTTCTGTTCTGTTGGTCT-TCGGAATCGAGGTAA 22723 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 |||| || | ||| | ||||| | |||| | | | |||||||||||||||| Sbjct 22724 TGATTAAGAGGGACGGACGGGGACATTAGTACTGCGGCGATAGAGGTGAAATTCTTGGA 22782 >seq851 Length=522413 Score = 93.3 bits (102), Expect = 4e-17 Identities = 130/179 (73%), Gaps = 5/179 (3%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT---TTGCTCGAATACATTAC 66 || ||||||||||||||||||||| | ||||||||||| | | || |||||| | Sbjct 510791 ACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCATCAATCGCCTGAATACTGTTG 510850 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 ||||||||||| ||||||||| | |||||| || ||| ||| | | ||| |||| Sbjct 510851 CATGGAATAATGGAATAGGACCT-TGGTTCTGTTCTGTTGGTCT-TCGGAATCGAGGTAA 510908 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 |||| || | ||| | ||||| | |||| | | | |||||||||||||||| Sbjct 510909 TGATTAAGAGGGACGGACGGGGACATTAGTACTGCGGCGATAGAGGTGAAATTCTTGGA 510967 >seq839 Length=72495 Score = 93.3 bits (102), Expect = 4e-17 Identities = 130/179 (73%), Gaps = 5/179 (3%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT---TTGCTCGAATACATTAC 66 || ||||||||||||||||||||| | ||||||||||| | | || |||||| | Sbjct 65988 ACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCATCAATCGCCTGAATACTGTTG 65929 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 ||||||||||| ||||||||| | |||||| || ||| ||| | | ||| |||| Sbjct 65928 CATGGAATAATGGAATAGGACCT-TGGTTCTGTTCTGTTGGTCT-TCGGAATCGAGGTAA 65871 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 |||| || | ||| | ||||| | |||| | | | |||||||||||||||| Sbjct 65870 TGATTAAGAGGGACGGACGGGGACATTAGTACTGCGGCGATAGAGGTGAAATTCTTGGA 65812 >seq829 Length=1740722 Score = 93.3 bits (102), Expect = 4e-17 Identities = 130/179 (73%), Gaps = 5/179 (3%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT---TTGCTCGAATACATTAC 66 || ||||||||||||||||||||| | ||||||||||| | | || |||||| | Sbjct 986158 ACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCATCAATCGCCTGAATACTGTTG 986217 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 ||||||||||| ||||||||| | |||||| || ||| ||| | | ||| |||| Sbjct 986218 CATGGAATAATGGAATAGGACCT-TGGTTCTGTTCTGTTGGTCT-TCGGAATCGAGGTAA 986275 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 |||| || | ||| | ||||| | |||| | | | |||||||||||||||| Sbjct 986276 TGATTAAGAGGGACGGACGGGGACATTAGTACTGCGGCGATAGAGGTGAAATTCTTGGA 986334 >seq801 Length=119047 Score = 93.3 bits (102), Expect = 4e-17 Identities = 130/179 (73%), Gaps = 5/179 (3%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT---TTGCTCGAATACATTAC 66 || ||||||||||||||||||||| | ||||||||||| | | || |||||| | Sbjct 106553 ACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCATCAATCGCCTGAATACTGTTG 106612 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 ||||||||||| ||||||||| | |||||| || ||| ||| | | ||| |||| Sbjct 106613 CATGGAATAATGGAATAGGACCT-TGGTTCTGTTCTGTTGGTCT-TCGGAATCGAGGTAA 106670 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 |||| || | ||| | ||||| | |||| | | | |||||||||||||||| Sbjct 106671 TGATTAAGAGGGACGGACGGGGACATTAGTACTGCGGCGATAGAGGTGAAATTCTTGGA 106729 >seq789 Length=136861 Score = 93.3 bits (102), Expect = 4e-17 Identities = 130/179 (73%), Gaps = 5/179 (3%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT---TTGCTCGAATACATTAC 66 || ||||||||||||||||||||| | ||||||||||| | | || |||||| | Sbjct 89901 ACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCATCAATCGCCTGAATACTGTTG 89960 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 ||||||||||| ||||||||| | |||||| || ||| ||| | | ||| |||| Sbjct 89961 CATGGAATAATGGAATAGGACCT-TGGTTCTGTTCTGTTGGTCT-TCGGAATCGAGGTAA 90018 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 |||| || | ||| | ||||| | |||| | | | |||||||||||||||| Sbjct 90019 TGATTAAGAGGGACGGACGGGGACATTAGTACTGCGGCGATAGAGGTGAAATTCTTGGA 90077 >seq328 Length=1149099 Score = 93.3 bits (102), Expect = 4e-17 Identities = 130/179 (73%), Gaps = 5/179 (3%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT---TTGCTCGAATACATTAC 66 || ||||||||||||||||||||| | ||||||||||| | | || |||||| | Sbjct 907391 ACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCATCAATCGCCTGAATACTGTTG 907332 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 ||||||||||| ||||||||| | |||||| || ||| ||| | | ||| |||| Sbjct 907331 CATGGAATAATGGAATAGGACCT-TGGTTCTGTTCTGTTGGTCT-TCGGAATCGAGGTAA 907274 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 |||| || | ||| | ||||| | |||| | | | |||||||||||||||| Sbjct 907273 TGATTAAGAGGGACGGACGGGGACATTAGTACTGCGGCGATAGAGGTGAAATTCTTGGA 907215 >seq954 Length=66514 Score = 89.7 bits (98), Expect = 5e-16 Identities = 129/179 (72%), Gaps = 5/179 (3%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT---TTGCTCGAATACATTAC 66 || ||||||||||||||||||||| | |||| |||||| | | || |||||| | Sbjct 48714 ACGTTTACTTTGAAAAAATTAGAGTGCTCAATGCAGGCATCAATCGCCTGAATACTGTTG 48773 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 ||||||||||| ||||||||| | |||||| || ||| ||| | | ||| |||| Sbjct 48774 CATGGAATAATGGAATAGGACCT-TGGTTCTGTTCTGTTGGTCT-TCGGAATCGAGGTAA 48831 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 |||| || | ||| | ||||| | |||| | | | |||||||||||||||| Sbjct 48832 TGATTAAGAGGGACGGACGGGGACATTAGTACTGCGGCGATAGAGGTGAAATTCTTGGA 48890 >seq803 Length=117798 Score = 89.7 bits (98), Expect = 5e-16 Identities = 129/179 (72%), Gaps = 5/179 (3%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT---TTGCTCGAATACATTAC 66 || ||||||||||||||||||||| | ||||||||||| | || |||||| | Sbjct 106527 ACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCATCAAGCGCCTGAATACTGTTG 106586 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 ||||||||||| ||||||||| | |||||| || ||| ||| | | ||| |||| Sbjct 106587 CATGGAATAATGGAATAGGACCT-TGGTTCTGTTCTGTTGGTCT-TCGGAATCGAGGTAA 106644 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 |||| || | ||| | ||||| | |||| | | | |||||||||||||||| Sbjct 106645 TGATTAAGAGGGACGGACGGGGACATTAGTACTGCGGCGATAGAGGTGAAATTCTTGGA 106703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511991538240