Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1705 295 5e-75 seq1179 239 4e-58 seq1123 228 6e-55 >seq1705 Length=717327 Score = 295 bits (326), Expect = 5e-75 Identities = 632/926 (68%), Gaps = 39/926 (4%) Strand=Plus/Minus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 ||||||| |||||| || ||||| |||||| || ||||| || || | ||| | | Sbjct 626353 ATGAACCATTATTGCGTGAAAATCCAAATCGTTTTGTTTTGTTTCCAATTCAATATCATG 626294 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 | |||||| |||||| ||||| || ||||| || |||||||| || || || || ||| Sbjct 626293 ACATTTGGATCATGTATAAAAAAGCTGAAGCATCATTCTGGACAGTTGAAGAAGTGGATC 626234 Query 61145 TGTCCAAAGACATGAA--TGAC---TGGGAGCGTTT--ATCGAGCGGTGAACAACATTTC 61197 | ||| | ||| || | ||| | | || || | |||| |||||||| Sbjct 626233 T-----AAGTCGTGATATTGCCCATTGGAATCAATTGAATGCAAA--TGAAAAACATTTC 626181 Query 61198 ATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTG 61257 |||| |||||| ||||| || ||||| || || ||||| |||||||| ||| | Sbjct 626180 ATTACACATGTATTGGCATTTTTTGCTGCAAGCGATGGTATTGTCAATGAAAATCTGGCC 626121 Query 61258 GAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATT 61317 |||||||| | || || ||| | | || || |||||||| || ||||| || ||| Sbjct 626120 GAACGTTTTATTCGTGATGTACAAATACCAGAAGCACGTTGTTTTTATGGCTTTCAAATT 626061 Query 61318 GCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTC-TCATCGATACGTACATCAGGGA 61376 ||||| || ||||| || || || ||||| ||| | || ||| ||||| | | | Sbjct 626060 GCCATTGAAAATGTTCATTCAGAAATGTA-----TTCATTATTGATCAATACAT-ATGTA 626007 Query 61377 GCGGGCGGAACGTGAAC--GATTGT----TCAATGCCATCGAGACGATACCGGCGGTGAA 61430 ||| | | |||||| |||| | |||||||||| | |||| || | Sbjct 626006 TCGGATCGTA-GTGAACAAGATTTTCTATTCAATGCCATACGTAATTTACCTTGTGTAGA 625948 Query 61431 GCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAA--CGGCTACATTTGGTGAA 61488 ||||| | ||||| | ||||| | ||| | | | | |||||| | |||| Sbjct 625947 AAAAAAAGCTAAATGGGCTATACGTTGGACC--CAGGATGATTCAGTTACATTCGCTGAA 625890 Query 61489 CGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATC 61548 || ||| | |||||||| | || || || | ||||| ||| || ||||||||||| Sbjct 625889 CGTTTGATTGCATTTGCAGCCGTTGAAGGAATCTTTTTTTCTGGTTCATTTGCCGCAATT 625830 Query 61549 TTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCA 61608 |||||| | || |||||||| || ||||| ||||| || || ||||| ||||| ||| Sbjct 625829 TTTTGGCTTAAAAAACGTGGCCTCATGCCTGGTCTTACATTTTCGAATGAATTGATTTCA 625770 Query 61609 CGCGACGAGGGCATGCATTGTGATTTTGC-TGTTTTGCTATTCAAACGCTATCTGGTGAA 61667 || || || || | |||||||||||||| || || ||| || ||| | || || Sbjct 625769 CGTGATGAAGGATTACATTGTGATTTTGCATGCTTATTGTTTC--ACCATAT-TCGT-AA 625714 Query 61668 TCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGA 61727 |||||| || | || | | ||| ||| || || || ||| | || |||||||| Sbjct 625713 TCGTCCATCACCACAACGAATTGTTGATATTATTATCGATGCTGTATCGATTGAACAGGA 625654 Query 61728 ATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCA 61787 ||| |||| || || || || || ||| | || |||||||||| | ||||||| | Sbjct 625653 ATTCTTGACCGATGCATTACCAGTTTCATTGATTGGCATGAATTCAAAATTAATGTCCGA 625594 Query 61788 GTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTG-GGTATGAAGCGGATCTATA 61846 |||||||||| | ||| || ||| | ||||| || ||| | |||| || |||| Sbjct 625593 TTATATTGAATATTGTGCAGATCGTTTATTGGTAGAATTGAATTGTGAAAAACAT-TATA 625535 Query 61847 ATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTT 61906 | ||| || |||||||| || ||||| ||||| |||| || || | ||||||| Sbjct 625534 AAACGGCCAATCCATTTGAATTTATGGAACAAATTTCATTGGAAGGTAAATCAAATTTTT 625475 Query 61907 TCGAGAAACGTGTAGGCGACTATCAA 61932 |||| |||||||| | ||| |||||| Sbjct 625474 TCGAAAAACGTGTTGCCGAATATCAA 625449 >seq1179 Length=350002 Score = 239 bits (264), Expect = 4e-58 Identities = 1006/1573 (64%), Gaps = 44/1573 (3%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || || || || || || | || |||| || || | | ||| ||||| || || Sbjct 63286 ATCCACTGTAAATTGTATAGCTTGTGCTGCCGGTTTTGTTCGTAAATAATACATTCCTGT 63227 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 || | ||| |||||| |||||||||||||||| | | |||||| | | || || Sbjct 63226 TTTCAATCCATTACGCCATCCATAGAAATGCATCGAAGTAATTTTTGCTTTAGATGGTTC 63167 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 |||| ||| | ||| | || ||||| ||||| || | ||||||||| ||||| Sbjct 63166 AGCCATATGAACATTGAGTGATTGACTTTGATCAATAAATGCACCACGATCAATGGCCAT 63107 Query 65257 GTCAATGATACGACGTCCC-GATATCTCCCAGACGGTCTTGTACAGGCGACGTACC-TCA 65314 |||| |||| | || | ||| ||||| || |||||||| | || || ||| Sbjct 63106 ATCAACAATAC-ATTTCTGTGGTATTTCCCATACAGTCTTGTATAA-CGCTTTAATATCA 63049 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAAT---AATGCGATTACGC 65371 || || || || | ||| | |||||||||| ||||| |||| | || | Sbjct 63048 TCCGGTATTGAATCGATATTCTGTATTGAACCACGATTAGCAATGATAATG-GTTTTCAA 62990 Query 65372 ATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACT 65431 || | || ||| | || | || ||| | || | ||| || |||| | || Sbjct 62989 TTCTTCACT--CCAAAGGCCAAGATTGATTAAATCAGTGAGCAAATGTTGATTAACAACA 62932 Query 65432 TGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGAT 65491 | || || |||| |||||| | || ||||| || || |||||||| ||| Sbjct 62931 TCAAAACTACCAGACATTACACGTCTAGTGTAAATGTTTGATGTATATGGTTCAAATGAT 62872 Query 65492 TCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAG 65551 ||| | ||||||| |||||| || |||||||| |||||||| || || || | || Sbjct 62871 TCATTATTGCCTAAAATTTGTGCTGTAGATGCTGTTGGCATTGGTGCAACAAGTAAACTA 62812 Query 65552 TTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACA--TCGGTT 65609 ||||| | || || |||| || |||||| | ||| | ||| | || ||| Sbjct 62811 TTTCGTATACCATTTTGAGCAATTTTTGCTTTCAATTCATTCCAATCCCAAAGATCAGTT 62752 Query 65610 TATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCC----GATACTGGCCGGT 65665 | || | ||||||||| | ||| || | || |||||||| | Sbjct 62751 GGTGTGCG--------GTTCCACATATCATATTGTAGAATACCTTTCGATACTGG----T 62704 Query 65666 GAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGT 65725 || || | | || || || | | || | || ||| || | || | | Sbjct 62703 GATCCTTCATATGTTTCATATGGGCCAAATTTTTCAGCCAATTCACAACTTGCTTCCAAT 62644 Query 65726 GCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCG 65785 || || ||||||| || || || || | ||| | || || || || || Sbjct 62643 GCACCATAATAAATTGTTTCAAATATTTGAATATTCATTTGTTTAGCTTCGAGACTTTCA 62584 Query 65786 TACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGA 65845 || || || ||| | | || | ||||| | |||||| || ||||| || || || Sbjct 62583 TATGGATAACGCATTAAGTTGAATGCATCGGCTAAACCTTGTACACCAATTCCAATCGGT 62524 Query 65846 CGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATG 65905 |||||||| | ||| |||||| |||| || |||| || || |||| |||||||||| Sbjct 62523 CGATGACGTAGATTCGAACGTTTCGCTTCCGGTAATGGATAAAAATTACTATCGATAATT 62464 Query 65906 CGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGT 65965 |||||||| ||||| || | || || | | || || ||||||| | Sbjct 62463 TTGTTCAAATTTTTTGTCATTACTTTAACAATTTCTTTGAGTTTATCATAATCAAA---T 62407 Query 65966 TTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTG 66025 || | | | ||| | ||| |||| ||| || | || || || | || Sbjct 62406 GTAAAAAGCTTTGGATCG----ACA----AAACGTGGCAATGA-AATTGAAGCCAAATTA 62356 Query 66026 CAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAG 66085 || || || || || |||| | | ||| || |||||||| || || ||||| || Sbjct 62355 CAAACGGCAATTTCATCAGCTGATGAATATTCAACAATTTCCGTACAAAGATTTGAACAT 62296 Query 66086 CGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATG 66145 ||||| |||||||| |||||||| || ||||| || ||| || || | |||| Sbjct 62295 TTGATGGTTCCCAAATTTTGTTGATTTGATTTACGATTACAATGATCTTTATATACCATG 62236 Query 66146 TACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTC 66205 || ||||| || || |||| ||| | || | ||||| ||| | | | |||| ||| Sbjct 62235 TATGGAGTACCAGTTTCAATTTGTGCATCCAAAATGGCAAACCATAAATCATGTGCTTTC 62176 Query 66206 ACCGTACGTACCGCC--CTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATT 66263 || | | |||| | ||||| || || || ||||| || || | |||||| || Sbjct 62175 ACT-TGTG-ACCGATAACGACCTTCACGCTCATATTGTTCATATAGCTTTTCGAATTCTT 62118 Query 66264 CACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCAT 66323 ||||||| ||| || | ||||| | | ||||||||||| ||||| ||||| Sbjct 62117 CACCCCAACATTCATGAAGTCCGGGACATTCATTTGGACACATCAATGACCACATACCAT 62058 Query 66324 CCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTG 66383 || ||| ||||| |||||| | ||| |||||||| | || ||||| || || |||| Sbjct 62057 CCATTTCAACACGTTTCATAAACAAATCCGGTATCCACAATGCATAGAATAGGTCACGTG 61998 Query 66384 CTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCAT 66443 | ||| |||| || || ||| || | || | || |||| || || |||| Sbjct 61997 CACGTAGCTCTTCGGAACCAGTATTCTTTTTTAGATCCAAAAAGGCAAAAATATCTGCAT 61938 Query 66444 GCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGT 66503 ||||||| |||| ||||| || || | || |||||| || |||||||| || || | Sbjct 61937 GCCATGGCTCCAAATAGATAGCAAATGCACCTGGACGTTTTCCACCACCTTGATCCACAT 61878 Query 66504 AGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGG 66563 | || || || ||||| ||||| ||||| ||||| | || || || ||||| | Sbjct 61877 AACGTGCAGTGTTATTGAATACACGTAACATTGGTACTAAACCATTGGAAAAACCATTCG 61818 Query 66564 TGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGG 66623 | || | || || || ||| || ||| |||||||| || ||||||||||||| Sbjct 61817 TACCAGCAATATATGAACCATGTGAACGAATACAATGAACATTAAGGCCAATACCACCGG 61758 Query 66624 CCGTCTTCGAGAT 66636 | | ||||| || Sbjct 61757 CAGATTTCGAAAT 61745 >seq1123 Length=366939 Score = 228 bits (252), Expect = 6e-55 Identities = 757/1168 (65%), Gaps = 26/1168 (2%) Strand=Plus/Plus Query 65707 TTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTC 65766 || ||| || | || | ||| || ||||||| || || ||||| | ||| || Sbjct 23758 TTCACAACTTGCTTCTAATGCACCATAATAAATTGTTTCAAAAATCTGAATATTGAGCAA 23817 Query 65767 ACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTG 65826 || || || || || ||||| || || ||| || | || | ||||||| |||||| Sbjct 23818 TCGAGCTTCTTCACTTTCGTATGGATAACGCATTAGAATGAATGCATCGGCCAAACCTTG 23877 Query 65827 AACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTA 65886 ||| || ||||| || || |||||||| | ||| ||| || || || ||||| || || Sbjct 23878 AACACCGATACCTATCGGTCGATGACGAAGATTCGAATATCGTGCTTCCGGTACGGGATA 23937 Query 65887 GTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAA 65946 ||| | | ||| |||| || | ||| || || || || | || || | ||| Sbjct 23938 ATAAGTAACATCAATAACTTTGTTTAGATTACGAGTGACAACTTTAACAATCGATTTCAA 23997 Query 65947 TTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAG 66006 || || |||||| | | || |||| | || | ||||| ||| | Sbjct 23998 TTTTTTAAAATCATA--GATT----CGATTTTTAT-----GAT-CAACAAATTTGTTCAA 24045 Query 66007 GGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTC 66066 |||| || || | || |||||||| || || || || | ||| || ||||| || Sbjct 24046 AGCAATCGAGGCTAAATTACAGACAGCAATTTCATCTTTAGATGAATATTCCACAATCTC 24105 Query 66067 GGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCA 66126 || || |||||| || || || || | ||| |||||||| || ||||| || Sbjct 24106 CGTACAAAGATTAGAACATTTGATTGTACCAAGATTTTGTTGATTTGATTTACGATTACA 24165 Query 66127 TGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTG 66186 |||||| || | ||| ||||| ||||| || || | ||| || ||||| |||| Sbjct 24166 ATGATCCTTATAAACCATATACGGTGTGCCAGTTTCGATTTGTGATTCAATAATGGAAAA 24225 Query 66187 CCAAAGAGCGCGTGC-CTTCACCGTA--CG-TACCGCCCTACCTTTGCGTTCGTAATGTT 66242 ||||||| | || || | || || || || || | | ||| || ||||||| Sbjct 24226 CCAAAGATCACGAGCACGACATTGTGATCGATATCGTTTTTCATTT----TCATAATGTT 24281 Query 66243 CGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGAC 66302 | || || | ||| || ||||||||| || | | | ||||||| | |||| Sbjct 24282 CATATAGCTTTTCAAATTCTTCACCCCAACAATCAAATAATCCAGGACACTCATTCGGAC 24341 Query 66303 ACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGA 66362 |||||| ||||| |||| || || ||||| ||| |||| |||||| ||||| | Sbjct 24342 ACATCAATGACCACATTGCATCTTGATCCACACGTTTCATGAATAAATCAGGAATCCAAA 24401 Query 66363 GGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGA 66422 |||| || || | ||| ||||| ||| || || ||| |||||| || | | | Sbjct 24402 GGGCATAAAATAAATCACGTGCACGTAATTCTTCGGATCCGGTATTTTTACGAAGATTTA 24461 Query 66423 GGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTT 66482 || |||||||| || | |||||||||||| || |||||||| || | || ||||| Sbjct 24462 TAAAATCAAAGATATCCGAATGCCATGGTTCTAGATAGATGGCAAATGCTCCAGGACGTT 24521 Query 66483 TGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGA 66542 || ||||||||| || || || ||||| ||| ||| | ||||| ||||| || || | Sbjct 24522 TGTTGCCACCTTGATCAACATATCGAGCCGTATTATTGTATACACGTAACATAGGAACCA 24581 Query 66543 GCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAA 66602 || ||||| ||||| || ||| | || || | || ||| |||| Sbjct 24582 AGCCATTAGAAAATCCATTCGTACCGGCAATATAACTACCAGAAGATCGGATACAATGAA 24641 Query 66603 CATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGA 66662 |||| ||||||||||| || || | || || || ||||||| | || Sbjct 24642 CATTAAGACCAATACCGCCAGCTGATTTTGAAATAATGGCACAATTTTTAAGGGTATCAT 24701 Query 66663 ATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGA-ACTAA--GTTGGG 66719 |||| || ||||| ||| | | || || || || | ||||| ||| || | Sbjct 24702 ATATACCTTCAATACTATCATCACTCATAGTAAGCAGAAAACATGATGATAATTGTGGCC 24761 Query 66720 GTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACA 66779 |||| |||| |||| || | || |||| || || ||||| ||| || | Sbjct 24762 GTTT---TGTGCCGGCATTAAACAATGTAGGTGATGCATGTGTAAACCAATTTTCCGAGA 24818 Query 66780 TGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATC 66839 | |||| ||||| || ||| | ||||| || | || |||||||| || | ||||| | Sbjct 24819 TTAAATTATACGTTTCAATGGCGGCATCGATATCATCACCATGAATACCAATAGCACAAC 24878 Query 66840 GCATCAGGAGGTATTGAGGCCGTTCGAC 66867 |||||| | | ||| || |||||||| Sbjct 24879 GCATCAACATATGTTGGGGTCGTTCGAC 24906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397559733815840