Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq471 156 2e-35 seq1210 140 1e-30 seq657 140 1e-30 seq658 109 2e-21 >seq471 Length=29810 Score = 156 bits (172), Expect = 2e-35 Identities = 118/139 (85%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 545 ATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGT 604 |||||||| |||||| | | ||||||||||||||||| |||| ||||| | |||| Sbjct 25232 ATTTGAGTTTTAGCATAATTTATTAGACCCGAAAGATGGTGATCTATACCTGAGTTGGGT 25291 Query 605 GAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCA 664 |||||||||||||||||||||||||||||| |||| | ||| ||||||||||| ||||| Sbjct 25292 GAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATACTGACGTGCAAATCGTTCGTCG 25351 Query 665 AATTTGGGTATAGGGGCGA 683 || ||||| |||||||||| Sbjct 25352 AACTTGGGCATAGGGGCGA 25370 Score = 156 bits (172), Expect = 2e-35 Identities = 202/277 (73%), Gaps = 23/277 (8%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTA-TGCGAGTGTTTGGGTGTCAAAC 466 ||||||||| ||||||||||||||||| || || | ||||||| | | |||| || | Sbjct 29511 CCCGTCTTGAAACACGGACCAAGGAGT-TAGCAAATTGTGCGAGTATAAGAGTGTTAAGC 29569 Query 467 CCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGAT 526 ||| ||||| |||||| || || || ||| |||| || || || Sbjct 29570 TCGTATGCGTAGTGAAAGCGAT---AGCTGTGAAATT-------TGCAACAGCGGCCAGA 29619 Query 527 CCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGA 586 | | | ||| |||| || ||||||| | | ||||||||||||||||| Sbjct 29620 CTTTA---------ATG--TTTGTGTTTGAGCATAATTTGTTAGACCCGAAAGATGGTGA 29668 Query 587 ACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGG 646 |||| ||||| | |||||||||||||||||||||||||||| || ||||||| | ||| Sbjct 29669 TCTATACCTGAGTTGGGTGAAGCCAGAGGAAACTCTGGTGGAAGCCCGCAGCGATACTGA 29728 Query 647 CGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||||| ||||| || ||||| |||||||||| Sbjct 29729 CGTGCAAATCGTTCGTCGAACTTGGGCATAGGGGCGA 29765 Score = 95.1 bits (104), Expect = 5e-17 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 73 GGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 132 || ||||| | | || || ||||||| | |||||||||||||| ||||||| || Sbjct 29316 GGTGGTAACCTCCATCAAACACTAAATACTACTAAGAGACCGATAGCGAACAAGTACTGT 29375 Query 133 GATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAG 192 || ||||| |||||||||||| | || ||||||||||| || |||||| ||| ||| Sbjct 29376 GAAGGAAAGTTGAAAAGCACTTCGAAAGGAGAGTTAAAA--GACCTGAAATCGTTATAAG 29433 Query 193 GGAAGC 198 |||||| Sbjct 29434 GGAAGC 29439 >seq1210 Length=2275 Score = 140 bits (154), Expect = 1e-30 Identities = 101/117 (86%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||| |||||||||||||||||||||||||| | | |||||||||||||||||||||| Sbjct 1666 TGGTACCCGAAAGATGGTGAACTATGCCTGGGCAAGACGAAGCCAGAGGAAACTCTGGTG 1725 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| | |||| ||||| |||||||||||||||||| | ||||||||||||||| Sbjct 1726 GAGGTCTGTAGCGATTCTGACGTGCAAATCGATCGTCAGACCTGGGTATAGGGGCGA 1782 >seq657 Length=2482312 Score = 140 bits (154), Expect = 1e-30 Identities = 101/117 (86%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||| |||||||||||||||||||||||||| | | |||||||||||||||||||||| Sbjct 5210 TGGTACCCGAAAGATGGTGAACTATGCCTGGGCAAGACGAAGCCAGAGGAAACTCTGGTG 5269 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| | |||| ||||| |||||||||||||||||| | ||||||||||||||| Sbjct 5270 GAGGTCTGTAGCGATTCTGACGTGCAAATCGATCGTCAGACCTGGGTATAGGGGCGA 5326 Score = 109 bits (120), Expect = 2e-21 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||| || ||||||| || | || |||||| | | || || |||||| Sbjct 3836 GAGTCAGGTTGCTTGAGAGTGCAGCTTAAAGTCGGTGGTAAACTCCATCCAAGACTAAAT 3895 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || |||||||||||| ||||||| |||| ||||| || ||||||||||| | Sbjct 3896 ATCACAGCGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGTTGCAAAGCACTTTGAAG 3955 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 ||||||||||| ||||||||||| Sbjct 3956 AGAGAGTTAAATAGCACGTGAAA 3978 >seq658 Length=722326 Score = 109 bits (120), Expect = 2e-21 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||| || ||||||| || | || |||||| | | || || |||||| Sbjct 203839 GAGTCAGGTTGCTTGAGAGTGCAGCTTAAAGTCGGTGGTAAACTCCATCCAAGACTAAAT 203780 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || |||||||||||| ||||||| |||| ||||| || ||||||||||| | Sbjct 203779 ATCACAGCGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGTTGCAAAGCACTTTGAAG 203720 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 ||||||||||| ||||||||||| Sbjct 203719 AGAGAGTTAAATAGCACGTGAAA 203697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079971643100