Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020
17-06-21] 1,322 sequences; 70,764,025 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq471 156 2e-35
seq1210 140 1e-30
seq657 140 1e-30
seq658 109 2e-21
>seq471
Length=29810
Score = 156 bits (172), Expect = 2e-35
Identities = 118/139 (85%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 545 ATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGT 604
|||||||| |||||| | | ||||||||||||||||| |||| ||||| | ||||
Sbjct 25232 ATTTGAGTTTTAGCATAATTTATTAGACCCGAAAGATGGTGATCTATACCTGAGTTGGGT 25291
Query 605 GAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCA 664
|||||||||||||||||||||||||||||| |||| | ||| ||||||||||| |||||
Sbjct 25292 GAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATACTGACGTGCAAATCGTTCGTCG 25351
Query 665 AATTTGGGTATAGGGGCGA 683
|| ||||| ||||||||||
Sbjct 25352 AACTTGGGCATAGGGGCGA 25370
Score = 156 bits (172), Expect = 2e-35
Identities = 202/277 (73%), Gaps = 23/277 (8%)
Strand=Plus/Plus
Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTA-TGCGAGTGTTTGGGTGTCAAAC 466
||||||||| ||||||||||||||||| || || | ||||||| | | |||| || |
Sbjct 29511 CCCGTCTTGAAACACGGACCAAGGAGT-TAGCAAATTGTGCGAGTATAAGAGTGTTAAGC 29569
Query 467 CCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGAT 526
||| ||||| |||||| || || || ||| |||| || || ||
Sbjct 29570 TCGTATGCGTAGTGAAAGCGAT---AGCTGTGAAATT-------TGCAACAGCGGCCAGA 29619
Query 527 CCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGA 586
| | | ||| |||| || ||||||| | | |||||||||||||||||
Sbjct 29620 CTTTA---------ATG--TTTGTGTTTGAGCATAATTTGTTAGACCCGAAAGATGGTGA 29668
Query 587 ACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGG 646
|||| ||||| | |||||||||||||||||||||||||||| || ||||||| | |||
Sbjct 29669 TCTATACCTGAGTTGGGTGAAGCCAGAGGAAACTCTGGTGGAAGCCCGCAGCGATACTGA 29728
Query 647 CGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||||||||||| ||||| || ||||| ||||||||||
Sbjct 29729 CGTGCAAATCGTTCGTCGAACTTGGGCATAGGGGCGA 29765
Score = 95.1 bits (104), Expect = 5e-17
Identities = 97/126 (77%), Gaps = 2/126 (2%)
Strand=Plus/Plus
Query 73 GGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 132
|| ||||| | | || || ||||||| | |||||||||||||| ||||||| ||
Sbjct 29316 GGTGGTAACCTCCATCAAACACTAAATACTACTAAGAGACCGATAGCGAACAAGTACTGT 29375
Query 133 GATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAG 192
|| ||||| |||||||||||| | || ||||||||||| || |||||| ||| |||
Sbjct 29376 GAAGGAAAGTTGAAAAGCACTTCGAAAGGAGAGTTAAAA--GACCTGAAATCGTTATAAG 29433
Query 193 GGAAGC 198
||||||
Sbjct 29434 GGAAGC 29439
>seq1210
Length=2275
Score = 140 bits (154), Expect = 1e-30
Identities = 101/117 (86%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626
||| |||||||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct 1666 TGGTACCCGAAAGATGGTGAACTATGCCTGGGCAAGACGAAGCCAGAGGAAACTCTGGTG 1725
Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|||| | |||| ||||| |||||||||||||||||| | |||||||||||||||
Sbjct 1726 GAGGTCTGTAGCGATTCTGACGTGCAAATCGATCGTCAGACCTGGGTATAGGGGCGA 1782
>seq657
Length=2482312
Score = 140 bits (154), Expect = 1e-30
Identities = 101/117 (86%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626
||| |||||||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct 5210 TGGTACCCGAAAGATGGTGAACTATGCCTGGGCAAGACGAAGCCAGAGGAAACTCTGGTG 5269
Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|||| | |||| ||||| |||||||||||||||||| | |||||||||||||||
Sbjct 5270 GAGGTCTGTAGCGATTCTGACGTGCAAATCGATCGTCAGACCTGGGTATAGGGGCGA 5326
Score = 109 bits (120), Expect = 2e-21
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
||||| |||| ||| || ||||||| || | || |||||| | | || || ||||||
Sbjct 3836 GAGTCAGGTTGCTTGAGAGTGCAGCTTAAAGTCGGTGGTAAACTCCATCCAAGACTAAAT 3895
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
|| |||||||||||| ||||||| |||| ||||| || ||||||||||| |
Sbjct 3896 ATCACAGCGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGTTGCAAAGCACTTTGAAG 3955
Query 160 AGAGAGTTAAAAAGCACGTGAAA 182
||||||||||| |||||||||||
Sbjct 3956 AGAGAGTTAAATAGCACGTGAAA 3978
>seq658
Length=722326
Score = 109 bits (120), Expect = 2e-21
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
||||| |||| ||| || ||||||| || | || |||||| | | || || ||||||
Sbjct 203839 GAGTCAGGTTGCTTGAGAGTGCAGCTTAAAGTCGGTGGTAAACTCCATCCAAGACTAAAT 203780
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
|| |||||||||||| ||||||| |||| ||||| || ||||||||||| |
Sbjct 203779 ATCACAGCGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGTTGCAAAGCACTTTGAAG 203720
Query 160 AGAGAGTTAAAAAGCACGTGAAA 182
||||||||||| |||||||||||
Sbjct 203719 AGAGAGTTAAATAGCACGTGAAA 203697
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079971643100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |